Pre_GI: OUP Neighbours

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Query: NC_010610:2013659 Lactobacillus fermentum IFO 3956, complete genome

D: 43.0803

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.

Number of Neighbours: 19




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_015428:21724Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.5441 %Subject Query22.2854
NC_015428:193817Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.9865 %Subject Query22.7687
NC_015697:116000*Lactobacillus reuteri SD2112 chromosome, complete genome79.7028 %Subject Query22.793
NC_015697:256000*Lactobacillus reuteri SD2112 chromosome, complete genome75.962 %Subject Query23.2612
NC_010080:1911932Lactobacillus helveticus DPC 4571, complete genome75.3278 %Subject Query25.9336
NC_008497:1575884*Lactobacillus brevis ATCC 367, complete genome75.1961 %Subject Query26.8361
NC_008525:561000Pediococcus pentosaceus ATCC 25745, complete genome77.2273 %Subject Query28.0034
NC_008526:565902Lactobacillus casei ATCC 334, complete genome77.1814 %Subject Query30.5707
NC_008529:1133665Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, complete75.6771 %Subject Query31.098
NC_015602:1949610Lactobacillus kefiranofaciens ZW3 chromosome, complete genome76.1458 %Subject Query31.6209
NC_008528:331260Oenococcus oeni PSU-1, complete genome76.9424 %Subject Query32.0829
NC_007576:471500*Lactobacillus sakei subsp. sakei 23K, complete genome75.6985 %Subject Query32.0931
NC_014727:889132Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,76.0509 %Subject Query32.2258
NC_008054:201075*Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, complete75.6771 %Subject ←→ Query34.2781
NC_007576:435713*Lactobacillus sakei subsp. sakei 23K, complete genome75.239 %Subject ←→ Query35.5911
NC_010610:861194Lactobacillus fermentum IFO 3956, complete genome75.1164 %Subject ←→ Query36.7806
NC_010610:755000*Lactobacillus fermentum IFO 3956, complete genome78.4222 %Subject ←→ Query39.2062
NC_010610:1649500Lactobacillus fermentum IFO 3956, complete genome80.913 %Subject ←→ Query39.2201
NC_010610:1580483*Lactobacillus fermentum IFO 3956, complete genome80.6036 %Subject ←→ Query44.2348