Pre_GI: OUP Neighbours

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Query: NC_002942:1109618 Legionella pneumophila subsp. pneumophila str. Philadelphia 1,

D: 25.2542

Host Lineage: Legionella pneumophila; Legionella; Legionellaceae; Legionellales; Proteobacteria; Bacteria

General Information: This strain is the isolate from the initial event of Legionellosis in Philadelphia, USA. Causes Legionnaire's disease. This organism is a non-marine bacterium usually found growing inside other organisms such as protozoans in aquatic environments. They can also be found in soil, freshwater, and in biofilms. The cause of the disease was traced to Legionella bacteria. Once the bacteria are brought into the lungs they make contact with alveolar macrophages and are internalized where they can cause severe respiratory distress. Internalization occurs through specialized vacuoles (replicative phagosomes) that allow the bacteria to grow and replicate prior to escape from the macrophage. Formation of the replicative phagosome, which requires reprogramming of the normal phagosome maturation pathway, requires a type IV secretion system called the Dot/Icm system. This type IV system is closely related to the conjugative system of plasmid ColIb-P9, and is involved in the secretion of numerous protein components that aid in formation of the replicative phagosome. Other virulence determinants include a set of multidrug transporters and other efflux pumps for toxic compounds that may allow the organism to persist in its habitat, a set of LPS phase variable genes that enhance immune evasion, and a type II secretion system for transport of hydrolases.

Number of Neighbours: 10




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_006368:2684358Legionella pneumophila str. Paris, complete genome92.3529 %Subject ←→ Query23.6352
NC_013512:126915*Sulfurospirillum deleyianum DSM 6946, complete genome75.3248 %Subject ←→ Query25.149
NC_008783:145305Bartonella bacilliformis KC583, complete genome75.9314 %Subject ←→ Query26.0032
NC_015559:3511231Marinomonas posidonica IVIA-Po-181 chromosome, complete genome77.3346 %Subject ←→ Query30.6283
NC_010161:1949637Bartonella tribocorum CIP 105476, complete genome77.6808 %Subject ←→ Query31.1808
NC_010161:1324381Bartonella tribocorum CIP 105476, complete genome77.1844 %Subject ←→ Query31.3762
NC_010161:2548254Bartonella tribocorum CIP 105476, complete genome75.7935 %Subject ←→ Query31.3939
NC_009654:4716417Marinomonas sp. MWYL1, complete genome77.883 %Subject ←→ Query32.6103
NC_002505:980595Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete75.1808 %Subject ←→ Query33.004
NC_010554:2646806Proteus mirabilis HI4320, complete genome78.3854 %Subject Query35.3988