Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_013766: Listeria monocytogenes 08-5578 chromosome, complete genome

NCBI: NC_013766

Host Lineage: Listeria monocytogenes; Listeria; Listeriaceae; Bacillales; Firmicutes; Bacteria

General Information: This organism, which causes listeriosis, is one of the leading causes of death from food-borne pathogens especially in pregnant women, newborns, the elderly, and immunocompromised individuals. It is found in environments such as decaying vegetable matter, sewage, water, and soil, and it can survive extremes of both temperatures (1-45 degrees C) and salt concentration marking it as an extremely dangerous food-born pathogen, especially on food that is not reheated. This organism is enteroinvasive, and utilizes an actin-based motility system by using a surface protein, ActA, that promotes actin polymerization, to spread intercellularly using the polymerized cytoskeletal protein as a "motor".

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1293244741618093Island text1.6229221.938845.5658Neighbours314BLASTN29324.gbk
217188919447022582Island text1.5313423.698942.8798Neighbours314BLASTN+171889.gbk
341799144031422324Island text2.5215828.12944.3439Neighbours325BLASTN417991.gbk
467990672094741042Island text1.4674723.340241.9783Neighbours325BLASTN+IslandViewer 679906.gbk
575798778604328057Island text1.8724921.631839.3227Neighbours325BLASTN757987.gbk
690655092548318934Island text1.7003222.005738.0436Neighbours325BLASTN906550.gbk
71202713122233919627Island text2.1412221.987537.6294Neighbours325BLASTN1202713.gbk
81293144*131559922456Island text1.5072822.628931.9223Neighbours21BLASTN+IslandViewer 1293144.gbk
91835964185480918846Island text2.038922.412339.7734Neighbours21BLASTNIslandViewer 1835964.gbk
101859634188229322660Island text1.6231927.903549.056Neighbours37BLASTNIslandViewer 1859634.gbk