Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013353: Escherichia coli O103:H2 str. 12009, complete genome

NCBI: NC_013353

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112660*3398921330Island text2.4495536.456628.3591Neighbours41BLASTN12660.gbk
2143358*16609922742Island text1.742931.736426.142Neighbours41BLASTN+IslandViewer 143358.gbk
360471962691322195Island text1.8888933.566425.1035Neighbours41BLASTN+IslandViewer 604719.gbk
486786989060722739Island text1.8087237.129737.9559Neighbours41BLASTNIslandViewer 867869.gbk
592293795098628050Island text5.3858443.345621.0817Neighbours41BLASTN+IslandViewer 922937.gbk
61305712133215626445Island text3.2181742.737427.1081Neighbours41BLASTN+IslandViewer 1305712.gbk
71339263*136273323471Island text2.4554735.203516.9558Neighbours41BLASTNIslandViewer 1339263.gbk
81472506149531022805Island text1.5184836.712736.0692Neighbours51BLASTN+IslandViewer 1472506.gbk
91711656173552123866Island text2.0751232.544821.2899Neighbours41BLASTN+IslandViewer 1711656.gbk
102134556*215269018135Island text1.7350832.821632.7324Neighbours51BLASTNIslandViewer 2134556.gbk
112272919229869725779Island text2.1778638.200330.1531Neighbours41BLASTNIslandViewer 2272919.gbk
122455052*247359918548Island text1.6499331.420226.5745Neighbours41BLASTNIslandViewer 2455052.gbk
132504072253559331522Island text4.7663144.300622.6105Neighbours41BLASTNIslandViewer 2504072.gbk
142911741294759935859Island text1.96332.017633.9105Neighbours41BLASTN+IslandViewer 2911741.gbk
153238742326213723396Island text2.821640.270521.0557Neighbours41BLASTN+IslandViewer 3238742.gbk
163474077351339539319Island text5.0732743.38918.097Neighbours41BLASTN+IslandViewer 3474077.gbk
173627355365976432410Island text3.1153743.157523.3016BLASTN+IslandViewer 3627355.gbk
183669500372827458775Island text3.1854442.604523.1319Neighbours41BLASTN+IslandViewer 3669500.gbk
193787991381070122711Island text2.3166933.897719.9903Neighbours41BLASTN+IslandViewer 3787991.gbk
203853082*389809945018Island text2.0957337.958229.1898Neighbours41BLASTN+IslandViewer 3853082.gbk
214313462433479021329Island text2.1836834.312222.1793Neighbours41BLASTN+4313462.gbk
224668181*469259924419Island text2.7159237.297721.3346Neighbours41BLASTNIslandViewer 4668181.gbk
234707712*472598018269Island text2.0048132.970623.2184Neighbours41BLASTNIslandViewer 4707712.gbk
245022196504082118626Island text1.4671633.037521.4155Neighbours41BLASTN+5022196.gbk
255090696*512565934964Island text3.0090542.849323.0641Neighbours53BLASTN+IslandViewer 5090696.gbk
265272863529459921737Island text1.5015734.849227.6952Neighbours41BLASTNIslandViewer 5272863.gbk
275361207*538029819092Island text1.854630.842724.5401Neighbours41BLASTN+IslandViewer 5361207.gbk