Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_012792: Variovorax paradoxus S110 chromosome 2, complete genome

NCBI: NC_012792

Host Lineage: Variovorax paradoxus; Variovorax; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Soil. Variovorax paradoxus S110 is able to grow autotrophically using hydrogen gas and carbon dioxide for energy and carbon. Variovorax paradoxus is a nutritionally diverse organism which is commonly isolated from soil. Strains of this organism are able to degrade a number of compounds such as explosives and pesticides. Variovorax paradoxus is also a plant-growth promoting organism, increasing the resistance of the plant to disease and heavy metals.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
131044333292422482Island text1.5486919.906915.811Neighbours11BLASTN+IslandViewer 310443.gbk
238567040991424245Island text1.8586522.243329.2215Neighbours11BLASTNIslandViewer 385670.gbk
354796758771739751Island text2.2478626.147118.0397Neighbours11BLASTN+IslandViewer 547967.gbk
462750065039622897Island text1.5162516.938218.6198Neighbours11BLASTNIslandViewer 627500.gbk
570786472612718264Island text1.5615816.275510.3423Neighbours11BLASTN+IslandViewer 707864.gbk
696229299068328392Island text2.165922.245117.1287Neighbours11BLASTN+IslandViewer 962292.gbk
71091669111509923431Island text1.5759820.506234.1455Neighbours11BLASTN+1091669.gbk