Pre_GI Gene

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Host: NC_014323 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014323:4619344 Herbaspirillum seropedicae SmR1 chromosome, complete genome

Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
461934446231443801transmembrane proteinQuickGO ontologyBLASTP
46231414624133993hypothetical proteinBLASTP
46241374624940804lipoproteinQuickGO ontologyBLASTP
462502346261501128hypothetical proteinBLASTP
462620746288762670ClpAB-type chaperone ATPaseQuickGO ontologyBLASTP
462894846300361089hypothetical proteinBLASTP
463000046318441845hypothetical proteinBLASTP
46318454632333489hypothetical proteinBLASTP
46324554632946492hypothetical proteinBLASTP
463298146344741494hypothetical proteinBLASTP
46344854634985501hypothetical proteinBLASTP
46350754635677603lipoproteinQuickGO ontologyBLASTP
46360444636673630transmembrane proteinQuickGO ontologyBLASTP
463673546380811347hypothetical proteinBLASTP
46380844638857774type IV VI secretion system transmembrane proteinQuickGO ontologyBLASTP
463915346406581506transmembrane proteinQuickGO ontologyBLASTP
46412724641862591hypothetical proteinBLASTP
4642198464227376tRNA-ThrQuickGO ontologyBLASTP
46422984642795498stringent starvation B proteinQuickGO ontologyBLASTP
46429284643539612stringent starvation transcription regulator A proteinQuickGO ontologyBLASTP
46436384644402765cytochrome c1 precursor transmembrane proteinQuickGO ontologyBLASTP
464442646458321407cytochrome b subunit transmembrane proteinQuickGO ontologyBLASTP
46458354646443609transmembrane ubiquinol-cytochrome C reductaseQuickGO ontologyBLASTP
46467364647173438large conductance mechanosensitive channel proteinQuickGO ontologyBLASTP
46471874647951765hypothetical proteinBLASTP
464799546491761182periplasmic trypsin-like serine proteaseQuickGO ontologyBLASTP
46491954649890696hypothetical proteinBLASTP
46499244650634711transcription regulator proteinQuickGO ontologyBLASTP
465065446524171764FAD-dependent D-lactate dehydrogenaseQuickGO ontologyBLASTP