Pre_GI Gene

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Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:1688500 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
168854316903061764sigma-54 dependent transcriptional regulatorQuickGO ontologyBLASTP
16904031690618216hypothetical proteinBLASTP
16906291691336708C factor cell-cell signaling proteinQuickGO ontologyBLASTP
169133316927181386deoxyribodipyrimidine photolyase single-strand-specificQuickGO ontologyBLASTP
16928591693254396cell division inhibitorQuickGO ontologyBLASTP
16933781693851474hypothetical proteinBLASTP
16938431694046204hypothetical proteinBLASTP
16946461694876231hypothetical proteinBLASTP
16949911695836846hypothetical proteinBLASTP
16961281696367240hypothetical proteinBLASTP
16964751696768294hypothetical proteinBLASTP
16968031697789987hypothetical proteinBLASTP
16978961698342447hypothetical proteinBLASTP
16983931698707315hypothetical proteinBLASTP
17003851701356972hypothetical proteinBLASTP
170136317031201758hypothetical proteinBLASTP
170316117042011041general secretion pathway protein AQuickGO ontologyBLASTP
17042041704665462hypothetical proteinBLASTP
17048071705073267phage proteinQuickGO ontologyBLASTP
17054751705849375middle operon regulator-related proteinQuickGO ontologyBLASTP
17061751706753579hypothetical proteinBLASTP
17068081707185378hypothetical proteinBLASTP
17072341707593360hypothetical proteinBLASTP
17078091708768960hypothetical proteinBLASTP
17087751709119345transposase OrfAB subunit AQuickGO ontologyBLASTP
17091161709988873transposase OrfAB subunit BQuickGO ontologyBLASTP
17099851710680696hypothetical proteinBLASTP
17107761710913138hypothetical proteinBLASTP
17109101711386477DNA repair protein RadCQuickGO ontologyBLASTP
17115001711706207transcriptional regulatorQuickGO ontologyBLASTP
171185317141982346sialidaseQuickGO ontologyBLASTP
171462217157581137N-acetylglucosamine-6-phosphate deacetylaseQuickGO ontologyBLASTP
17157621716625864N-acetylmannosamine kinaseQuickGO ontologyBLASTP
17166131717335723N-acetylmannosamine-6-phosphate 2-epimeraseQuickGO ontologyBLASTP
17175501718515966TRAP-type transport system periplasmic componentQuickGO ontologyBLASTP
17185661719087522TRAP-type transport system small permease componentQuickGO ontologyBLASTP
171909517203781284TRAP-type transport system large permease componentQuickGO ontologyBLASTP
17204161721312897N-acetylneuraminate lyaseQuickGO ontologyBLASTP
17214471722277831sialic acid utilization regulator RpiR familyQuickGO ontologyBLASTP
172245917236131155N-acetylneuraminic acid mutarotaseQuickGO ontologyBLASTP
172362817246981071sialic acid-induced transmembrane protein NanMQuickGO ontologyBLASTP
17247631725623861hypothetical proteinBLASTP
172565117293133663hypothetical proteinBLASTP
172929517313582064hypothetical proteinBLASTP
173149917338802382hypothetical proteinBLASTP
17347221735225504type I restriction-modification system specificity subunitQuickGO ontologyBLASTP
173522617366381413hypothetical proteinBLASTP
173663117386221992hypothetical proteinBLASTP
173865017417183069type I site-specific restriction-modification system R restriction subunit-like helicaseQuickGO ontologyBLASTP
174176317438832121hypothetical proteinBLASTP
17438761744610735chemotaxis protein MotB-related proteinQuickGO ontologyBLASTP
174460717460581452hypothetical proteinBLASTP
174604917473201272hypothetical proteinBLASTP
174746017490851626hypothetical proteinBLASTP
174908517509291845hypothetical proteinBLASTP
175092617529532028hypothetical proteinBLASTP