Pre_GI: BLASTP Hits

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Query: NC_012668:1688500:1691333 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 1691333, End: 1692718, Length: 1386

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017270:1755552:1790924179092417923121389Vibrio cholerae LMA3984-4 chromosome chromosome I, completeDeoxyribodipyrimidine photolyase, single-strand- specific0943
NC_013446:2237854:2258323225832322597441422Comamonas testosteroni CNB-2, complete genomeDNA photolyase, FAD-binding protein4e-74278
NC_013967:2641433:2680567268056726820781512Haloferax volcanii DS2 chromosome, complete genomedeoxyribodipyrimidine photolyase7e-63241
NC_006677:1052031:1073968107396810754071440Gluconobacter oxydans 621H, complete genomeDeoxyribodipyrimidine photolyase2e-37157
NC_010003:1052997:1059259105925910606471389Petrotoga mobilis SJ95, complete genomeDeoxyribodipyrimidine photo-lyase1e-35150
NC_008347:1636660:1636660163666016381591500Maricaulis maris MCS10, complete genomeDeoxyribodipyrimidine photo-lyase2e-31137
NC_009485:5171658:5173487517348751749321446Bradyrhizobium sp. BTAi1 chromosome, complete genomedeoxyribodipyrimidine photo-lyase type I4e-31136
NC_010475:2896000:2918298291829829197311434Synechococcus sp. PCC 7002, complete genomedeoxyribopyrimidine photolyase7e-31135
NC_013757:900500:9014229014229027861365Geodermatophilus obscurus DSM 43160, complete genomeDeoxyribodipyrimidine photo-lyase2e-30133
NC_012779:2755338:2773018277301827744331416Edwardsiella ictaluri 93-146, complete genomedeoxyribodipyrimidine photo-lyase2e-29130
NC_017095:1627686:1632270163227016336101341Fervidobacterium pennivorans DSM 9078 chromosome, complete genomedeoxyribodipyrimidine photolyase2e-29130
NC_012588:211633:2264832264832277841302Sulfolobus islandicus M.14.25 chromosome, complete genomedeoxyribodipyrimidine photo-lyase2e-29130
NC_004631:2205821:2229355222935522307761422Salmonella enterica subsp. enterica serovar Typhi Ty2, completedeoxyribodipyrimidine photolyase7e-29128
NC_016832:2201860:2226120222612022275411422Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Deoxyribodipyrimidine photo-lyase7e-29128
NC_010102:2322866:2347834234783423493361503Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-28127
NC_011147:2085241:2109527210952721109481422Salmonella enterica subsp. enterica serovar Paratyphi A strdeoxyribodipyrimidine photolyase5e-28125
NC_006511:2090058:2114344211434421157651422Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCdeoxyribodipyrimidine photolyase5e-28125
NC_018679:2412000:2430005243000524314351431Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, completedeoxyribodipyrimidine photo-lyase6e-28125
NC_016001:1893685:1914423191442319157091287Flavobacterium branchiophilum, complete genomeDeoxyribodipyrimidine photolyase PhrB18e-28125
NC_015224:1514747:1531720153172015331651446Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,deoxyribodipyrimidine photolyase1e-26121
NC_016940:3632974:3632974363297436343111338Saprospira grandis str. Lewin chromosome, complete genomedeoxyribodipyrimidine photo-lyase2e-26120
NC_008576:1413778:1431359143135914327891431Magnetococcus sp. MC-1, complete genomeDeoxyribodipyrimidine photo-lyase3e-26120
NC_009718:1470972:1490049149004914913591311Fervidobacterium nodosum Rt17-B1, complete genomedeoxyribodipyrimidine photo-lyase3e-25116
NC_007516:193498:2206182206182220511434Synechococcus sp. CC9605, complete genomeDeoxyribodipyrimidine photolyase4e-25116
NC_007205:1232734:1253122125312212545431422Candidatus Pelagibacter ubique HTCC1062, complete genomeDeoxyribodipyrimidine photolyase (DNA photolyase) (Photoreactivating enzyme)4e-25116
NC_012947:3077922:3082785308278530842061422Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completedeoxyribodipyrimidine photolyase1e-24115
NC_012967:707083:7204007204007218211422Escherichia coli B str. REL606 chromosome, complete genomedeoxyribodipyrimidine photolyase1e-24115
NC_008782:1863853:1869256186925618707221467Acidovorax sp. JS42, complete genomeDeoxyribodipyrimidine photo-lyase5e-25115
NC_010468:3209326:3214192321419232156101419Escherichia coli ATCC 8739, complete genomeDeoxyribodipyrimidine photo-lyase1e-24114
NC_013960:243884:2613422613422627751434Nitrosococcus halophilus Nc4 chromosome, complete genomeDeoxyribodipyrimidine photo-lyase1e-24114
CP002185:794732:8102778102778116951419Escherichia coli W, complete genomedeoxyribodipyrimidine photolyase, FAD-binding protein2e-24114
NC_008027:896000:9163439163439177971455Pseudomonas entomophila L48, complete genomedeoxyribodipyrimidine photolyase (photoreactivation), FAD-binding3e-24113
NC_017059:1727095:1727095172709517282041110Rhodospirillum photometricum DSM 122, complete genomeDeoxyribodipyrimidine photo-lyase type I1e-23111
NC_018643:857911:8799138799138813371425Alpha proteobacterium HIMB5 chromosome, complete genomeFAD-binding protein, DNA photolyase family,DNA photolyase1e-22107
NC_020209:47504:1247871247871262291443Pseudomonas poae RE*1-1-14, complete genomedeoxyribodipyrimidine photolyase2e-22107
NC_017262:1913302:1925116192511619265191404Zymomonas mobilis subsp. mobilis ATCC 10988 chromosome, completedeoxyribodipyrimidine photo-lyase1e-21105
NC_010125:763141:7676137676137690041392Gluconacetobacter diazotrophicus PAl 5, complete genomeputative deoxyribodipyrimidine photo-lyase1e-21105
NC_003450:627500:6425536425536440011449Corynebacterium glutamicum ATCC 13032, complete genomedeoxyribodipyrimidine photolyase7e-21102
NC_006958:628035:6440146440146454621449Corynebacterium glutamicum ATCC 13032, complete genomeDEOXYRIBODIPYRIMIDINE PHOTOLYASE7e-21102
NC_007940:97949:1207501207501221771428Rickettsia bellii RML369-C, complete genomeDeoxyribodipyrimidine photo-lyase1e-20101
NC_009428:807577:8293688293688307801413Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomedeoxyribodipyrimidine photo-lyase3e-1996.7
NC_018644:516157:536362536362537096735Alpha proteobacterium HIMB59 chromosome, complete genomeFAD-binding protein, DNA photolyase family7e-1789
NC_015948:2367000:2368100236810023697041605Haloarcula hispanica ATCC 33960 chromosome chromosome I, completedeoxyribodipyrimidine photolyase5e-1686.3
NC_020911:4428000:4449886444988644514211536Octadecabacter antarcticus 307, complete genomecytochrome/photolyase-like protein1e-1171.6
NC_017079:5034500:5058257505825750596331377Caldilinea aerophila DSM 14535 = NBRC 104270, complete genomehypothetical protein6e-1169.3
NC_014752:2087998:2114050211405021153511302Neisseria lactamica ST-640, complete genomedeoxyribodopyrimidine photolyase4e-1066.2
NC_018644:137755:1403511403511417961446Alpha proteobacterium HIMB59 chromosome, complete genomeFAD-binding protein, DNA photolyase family,DNA photolyase4e-0859.7
NC_008319:262894:263822263822264769948Synechococcus sp. CC9311, complete genomeblue light photoreceptor cryptochrome2e-0757.8
NC_020911:4428000:4436048443604844372651218Octadecabacter antarcticus 307, complete genomehypothetical protein2e-0654.3
NC_015186:2839668:2839668283966828412871620Acidiphilium multivorum AIU301, complete genomedeoxyribodipyrimidine photo-lyase2e-0654.3