Pre_GI: BLASTP Hits

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Query: NC_012668:1688500:1690629 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 1690629, End: 1691336, Length: 708

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017270:1755552:179230917923091793016708Vibrio cholerae LMA3984-4 chromosome chromosome I, completeC-factor, putative2e-123441
NC_011757:1288637:129044312904431291171729Methylobacterium chloromethanicum CM4, complete genomeshort-chain dehydrogenase/reductase SDR7e-35147
NC_012988:1540587:154239415423941543059666Methylobacterium extorquens DM4, complete genomeshort-chain dehydrogenase/reductase SDR8e-35147
NC_013446:2237854:226147722614772262022546Comamonas testosteroni CNB-2, complete genomehypothetical protein1e-34146
NC_015556:1188500:121738012173801218150771Pseudomonas fulva 12-X chromosome, complete genomeshort-chain dehydrogenase/reductase SDR2e-32139
NC_007005:98488:130166130166130936771Pseudomonas syringae pv. syringae B728a, complete genomeShort-chain dehydrogenase/reductase SDR1e-30133
NC_009050:811358:824783824783825436654Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceshort-chain dehydrogenase/reductase SDR2e-30132
NC_005773:106000:127470127470128234765Pseudomonas syringae pv. phaseolicola 1448A, complete genomeoxidoreductase, short-chain dehydrogenase/reductase family7e-30130
NC_007484:3035068:304975630497563050454699Nitrosococcus oceani ATCC 19707, complete genomeShort-chain dehydrogenase/reductase SDR3e-24112
NC_012968:1945614:194728119472811947976696Methylotenera mobilis JLW8, complete genomeshort-chain dehydrogenase/reductase SDR1e-1893.6
NC_009092:2282437:232045523204552321150696Shewanella loihica PV-4, complete genomeshort-chain dehydrogenase/reductase SDR6e-1684.3
NC_008819:85539:104698104698105363666Prochlorococcus marinus str. NATL1A, complete genomeShort-chain dehydrogenases of various substrate specificities3e-1582.4
NC_007513:942500:957218957218957883666Synechococcus sp. CC9902, complete genomeshort-chain dehydrogenase/reductase (SDR) superfamily5e-1478.2
NC_007645:5160133:518868251886825189344663Hahella chejuensis KCTC 2396, complete genomeshort-chain alcohol dehydrogenase-like protein7e-1477.4
NC_008319:1306482:133612413361241336789666Synechococcus sp. CC9311, complete genomeShort-chain dehydrogenase/reductase8e-1477.4
NC_011295:246000:246030246030246704675Coprothermobacter proteolyticus DSM 5265, complete genome3-oxoacyl-[acyl-carrier-protein] reductase (3-ketoacyl-acyl carrier protein reductase)8e-0753.9
NC_009654:4716417:473479447347944735570777Marinomonas sp. MWYL1, complete genomeshort-chain dehydrogenase/reductase SDR2e-0653.1