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Query: NC_012668:1688500 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 1688500, End: 1752953, Length: 64454

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_002505:1892430*1892430192509932670Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete048970BLASTN svgBLASTP svg
NC_002505:19317501931750195259920850Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete037270BLASTN svgBLASTP svg
NC_002506:32455232455235839733846Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete03931BLASTN svgBLASTP svg
NC_015633:29195012919501294340723907Vibrio anguillarum 775 chromosome chromosome I, complete sequence03600BLASTN svgBLASTP svg
NC_002506:37062937062943982869200Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete02460BLASTN svgBLASTP svg
NC_002505:23856923856927414635578Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete02452BLASTN svgBLASTP svg
NC_015633:2565753*2565753261159945847Vibrio anguillarum 775 chromosome chromosome I, complete sequence02020BLASTN svgBLASTP svg
NC_005139:2201820*2201820227810176282Vibrio vulnificus YJ016 chromosome I, complete sequence01612BLASTN svgBLASTP svg
NC_011566:47096724709672473260322932Shewanella piezotolerans WP3, complete genome4e-60242BLASTN svgBLASTP svg
NC_008322:2077628*2077628211677239145Shewanella sp. MR-7, complete genome2e-49206BLASTN svgBLASTP svg
NC_012691:24762232476223251032334101Tolumonas auensis DSM 9187, complete genome7e-34155BLASTN svgBLASTP svg
NC_002505:514732*51473255228437553Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete7e-31145BLASTN svgBLASTP svg
NC_005139:79654679654681991523370Vibrio vulnificus YJ016 chromosome I, complete sequence1e-29141BLASTN svgBLASTP svg
NC_014366:1435785*1435785146660130817Gamma proteobacterium HdN1, complete genome6e-28135BLASTN svgBLASTP svg
NC_005773:106000*10600015088044881Pseudomonas syringae pv. phaseolicola 1448A, complete genome2e-24123BLASTN svgBLASTP svg
NC_009901:15163401516340153887622537Shewanella pealeana ATCC 700345, complete genome1e-22117BLASTN svgBLASTP svg
NC_008255:33316133331613337748645874Cytophaga hutchinsonii ATCC 33406, complete genome5e-1695.6BLASTN svgBLASTP svg
NC_008345:37569773756977377563418658Shewanella frigidimarina NCIMB 400, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_009997:26996442699644272218322540Shewanella baltica OS195, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_009997:51882215188221522795839738Shewanella baltica OS195, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_013961:73037*7303710749134455Erwinia amylovora, complete genome1e-1387.7BLASTN svgBLASTP svg
NC_009783:16656101665610168785322244Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequence8e-1281.8BLASTN svgBLASTP svg
NC_007712:3629358*3629358365546826111Sodalis glossinidius str. 'morsitans', complete genome8e-1281.8BLASTN svgBLASTP svg
NC_014306:49013904901390494640145012Erwinia billingiae Eb661, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_014306:35249803524980358375158772Erwinia billingiae Eb661, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_014306:31020003102000312424122242Erwinia billingiae Eb661, complete genome3e-1179.8BLASTN svgBLASTP svg
NC_009999:38832388326239723566Shewanella baltica OS195 plasmid pS19502, complete sequence1e-1077.8BLASTN svgBLASTP svg
NC_004459:349500*34950040074451245Vibrio vulnificus CMCP6 chromosome I, complete sequence5e-1075.8BLASTN svgBLASTP svg
NC_013446:1724000*1724000175930835309Comamonas testosteroni CNB-2, complete genome2e-0973.8BLASTN svgBLASTP svg
NC_020156:86140286140287909917698Nonlabens dokdonensis DSW-6, complete genome8e-0971.9BLASTN svgBLASTP svg
NC_013446:16485561648556170768159126Comamonas testosteroni CNB-2, complete genome8e-0971.9BLASTN svgBLASTP svg
NC_005966:33348643334864335435519492Acinetobacter sp. ADP1, complete genome3e-0869.9BLASTN svgBLASTP svg
NC_004459:32439873243987327990435918Vibrio vulnificus CMCP6 chromosome I, complete sequence3e-0869.9BLASTN svgBLASTP svg
NC_008577:45335744533574455327719704Shewanella sp. ANA-3 chromosome 1, complete sequence1e-0767.9BLASTN svgBLASTP svg
NC_013592:32630053263005329243329429Dickeya dadantii Ech586, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_008787:685401*68540171140226002Campylobacter jejuni subsp. jejuni 81-176, complete genome2e-0663.9BLASTN svgBLASTP svg
NC_002516:3079850*3079850310675226903Pseudomonas aeruginosa PAO1, complete genome8e-0661.9BLASTN svgBLASTP svg