Pre_GI Gene

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Host: NC_011353 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011353:4688000 Escherichia coli O157:H7 str. EC4115 chromosome, complete genome

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is associated with Hamburger disease, which is caused by the contamination of meat products by enterohemorrhagic E. coli (EHEC). The identifier O157:H7 refers to the serotype of EHEC, and reflects the specific antigenic markers found on the surface of the cell. EHEC attaches and effaces to cells in the large intestine. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
46880664688407342BLASTP
46886804688793114BLASTP
46894034689564162IS66 family element orf1QuickGO ontologyBLASTP
46895614689908348IS66 family element orf2QuickGO ontologyBLASTP
468995846914961539IS66 family element transposaseQuickGO ontologyBLASTP
46919364692055120hypothetical proteinBLASTP
46923614692798438protein EspFQuickGO ontologyBLASTP
46928214692973153hypothetical protein
46934764693697222type III secretion apparatus needle proteinQuickGO ontologyBLASTP
46937334694140408hypothetical proteinBLASTP
46941474694941795protein EspBQuickGO ontologyBLASTP
469510646962301125protein EspDQuickGO ontologyBLASTP
46962434696680438protein EspAQuickGO ontologyBLASTP
469688046979351056protein SepLQuickGO ontologyBLASTP
469807846992981221type III secretion apparatus protein YscDHrpQ familyQuickGO ontologyBLASTP
469956247023662805intimin C-type lectin domain-containing proteinQuickGO ontologyBLASTP
47024264702896471Tir chaperoneQuickGO ontologyBLASTP
470303447047101677TirQuickGO ontologyBLASTP
47051344705619486Map proteinQuickGO ontologyBLASTP
47060114706394384hypothetical proteinBLASTP
47065924707098507hypothetical proteinBLASTP
47071294708046918protein SepQQuickGO ontologyBLASTP
47084184708738321ST25 proteinQuickGO ontologyBLASTP
470879847101381341type III secretion apparatus H-transporting two-sector ATPaseQuickGO ontologyBLASTP
471012247121492028type III secretion protein HrcV familyQuickGO ontologyBLASTP
47121464712499354ST22 proteinQuickGO ontologyBLASTP
47126624712805144hypothetical protein
47134474714019573type III secretion apparatus lipoprotein YscJHrcJ familyQuickGO ontologyBLASTP
47141754714336162hypothetical protein
47143614714480120protein SepDQuickGO ontologyBLASTP
471448047160181539type III secretion outer membrane pore YscCHrcC familyQuickGO ontologyBLASTP
47173394717710372negative regulator GrlRQuickGO ontologyBLASTP
47179064718364459transglycosylase SLT domain-containing proteinQuickGO ontologyBLASTP
471836147193981038secretion system apparatus protein SsaUQuickGO ontologyBLASTP
47193914720167777type III secretion apparatus protein SpaRYscTHrcTQuickGO ontologyBLASTP
47201674720292126EscS proteinQuickGO ontologyBLASTP
47204364721089654type III secretion system proteinQuickGO ontologyBLASTP
47210944721747654hypothetical proteinBLASTP
47217344721877144hypothetical proteinBLASTP
47223304722644315hypothetical proteinBLASTP
47226574722875219type III secretion system protein YseE familyQuickGO ontologyBLASTP
47228904723261372hypothetical proteinBLASTP
472457547257201146protein EspGQuickGO ontologyBLASTP
47258484726666819sdiA-regulated domain-containing proteinQuickGO ontologyBLASTP
47270604727173114hypothetical protein
47274384727623186hypothetical proteinBLASTP
47276864728609924carboxylateamino acidamine transporterQuickGO ontologyBLASTP
47286134729431819hypothetical proteinBLASTP
47294284729571144hypothetical protein
47296534729946294hypothetical proteinBLASTP
472998747312251239BLASTP
47314114731764354hypothetical proteinBLASTP
47317484732071324DNA-binding proteinQuickGO ontologyBLASTP
47321874732639453hypothetical proteinBLASTP
47326924733057366BLASTP
473303047341031074BLASTP
473420047359661767cryptic adenine deaminaseQuickGO ontologyBLASTP
473601247374031392sugar phosphate antiporterQuickGO ontologyBLASTP
473754147388601320regulatory protein UhpCQuickGO ontologyBLASTP