Pre_GI Gene

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Host: NC_010407 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010407:3132683 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
31326833133159477hypothetical proteinBLASTP
31331783134041864hypothetical proteinBLASTP
31341053135010906homocysteine methyltransferaseQuickGO ontologyBLASTP
31351603135693534MarR family transcriptional regulatorQuickGO ontologyBLASTP
31357323136430699putative hydrolaseQuickGO ontologyBLASTP
31366523136897246BLASTP
31369173137435519hypothetical protein
31374723137945474hypothetical protein
31381513138393243hypothetical protein
31384593138995537hypthetical proteinQuickGO ontology
31390773139412336putative Lsr2-like proteinQuickGO ontologyBLASTP
31395693139958390hypothetical proteinBLASTP
31401343140850717hypothetical proteinBLASTP
31409403141311372hypothetical protein
31416773142288612hypothetical protein
31423023142793492hypothetical protein
31430693143590522putative DNA invertaseQuickGO ontologyBLASTP
31441483144990843putative pat-1-like proteinQuickGO ontologyBLASTP
31454433145763321hypothetical proteinBLASTP
314596731469891023putative pat-1-like proteinQuickGO ontologyBLASTP
31473463147771426hypothetical protein
31479333148604672GntR family transcriptional regulatorQuickGO ontologyBLASTP
314875231501281377putative nucleotide transporterQuickGO ontologyBLASTP
31501253150856732putative isochorismatase hydrolaseQuickGO ontologyBLASTP
315240031536411242putative nucleotide permeaseQuickGO ontologyBLASTP
31539283154890963putative insertion element IS1121 transposaseQuickGO ontologyBLASTP