Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:5723787 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
572378757256551869protein export protein SecDQuickGO ontologyBLASTP
57257185726056339preprotein translocase subunit YajCQuickGO ontologyBLASTP
572610457272371134queuine tRNA-ribosyltransferaseQuickGO ontologyBLASTP
572723457282981065S-adenosylmethioninetRNA ribosyltransferase-isomeraseQuickGO ontologyBLASTP
5728407572849185tRNA-LeuQuickGO ontologyBLASTP
572865757298981242site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
57301455731083939hypothetical proteinBLASTP
573271857356932976hypothetical proteinBLASTP
57357825736762981chromosome segregation SMC protein putativeQuickGO ontologyBLASTP
57370815737446366transcriptional regulator putativeQuickGO ontologyBLASTP
574007557412771203hypothetical proteinBLASTP
574134157424711131hypothetical proteinBLASTP
574343757450141578hypothetical proteinBLASTP
57453495746017669extracellular protease putativeQuickGO ontologyBLASTP
574626157473401080pvdSQuickGO ontologyBLASTP
57474375748342906hypothetical proteinBLASTP
574833257496541323diaminobutyrate--2-oxoglutarate aminotransferaseQuickGO ontologyBLASTP
574972057510631344lysine N6-hydroxylaseL-ornithine N5-oxygenase family proteinQuickGO ontologyBLASTP
57511915751814624glutathione S-transferase domain proteinQuickGO ontologyBLASTP
57518995752744846transcriptional regulator AraC familyQuickGO ontologyBLASTP
57527945753531738hypothetical proteinBLASTP
575354857548671320porin DQuickGO ontologyBLASTP
57549635755676714acid phosphatase putativeQuickGO ontologyBLASTP
57558295756047219hypothetical protein
575613257574721341sensor histidine kinaseQuickGO ontologyBLASTP
57574695758179711DNA-binding response regulatorQuickGO ontologyBLASTP