Pre_GI: BLASTP Hits

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Query: NC_004129:5723787:5753548 Pseudomonas fluorescens Pf-5, complete genome

Start: 5753548, End: 5754867, Length: 1320

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002516:1031386:1043983104398310453141332Pseudomonas aeruginosa PAO1, complete genomeBasic amino acid, basic peptide and imipenem outer membrane porin OprD precursor4e-75282
NC_010501:30000:6908569085704281344Pseudomonas putida W619, complete genomeouter membrane porin8e-52204
NC_002947:8394:5239452394537371344Pseudomonas putida KT2440, complete genomeporin, putative8e-52204
NC_009512:27783:6436964369657121344Pseudomonas putida F1, complete genomeouter membrane porin8e-52204
NC_010322:29983:6515165151664941344Pseudomonas putida GB-1 chromosome, complete genomeouter membrane porin8e-52204
NC_017986:2548720:2598569259856925999121344Pseudomonas putida ND6 chromosome, complete genomeporin8e-52204
NC_009439:1297851:1318463131846313198031341Pseudomonas mendocina ymp, complete genomeouter membrane porin4e-51202
NC_015733:5909821:5946188594618859475311344Pseudomonas putida S16 chromosome, complete genomeouter membrane porin5e-51202
NC_009434:3611738:3695568369556836968871320Pseudomonas stutzeri A1501, complete genomeouter membrane porin5e-49195
NC_015740:1291739:1301977130197713032961320Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeouter membrane porin5e-49195
NC_009439:2427120:2449480244948024508021323Pseudomonas mendocina ymp, complete genomeouter membrane porin7e-48191
NC_015410:3003417:3011502301150230126981197Pseudomonas mendocina NK-01 chromosome, complete genomeporin2e-39163
NC_009512:2238437:2259992225999222612811290Pseudomonas putida F1, complete genomeouter membrane porin2e-38160
NC_002947:4293252:4294069429406942953701302Pseudomonas putida KT2440, complete genomeporin, putative3e-38159
NC_004129:1014986:1019646101964610210521407Pseudomonas fluorescens Pf-5, complete genomeouter membrane porin, OprD family4e-38159
NC_015556:1188500:1198293119829311995401248Pseudomonas fulva 12-X chromosome, complete genomeouter membrane porin2e-37156
NC_012660:1579204:1598386159838615996781293Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein1e-36154
NC_002516:2306776:2323554232355423247831230Pseudomonas aeruginosa PAO1, complete genomeprobable porin4e-35149
NC_004578:6089958:6121092612109261223661275Pseudomonas syringae pv. tomato str. DC3000, complete genomeouter membrane porin, OprD family1e-34147
NC_007005:5825925:5842863584286358441371275Pseudomonas syringae pv. syringae B728a, complete genomeouter membrane porin2e-34146
NC_012560:4929683:4951297495129749525651269Azotobacter vinelandii DJ, complete genomeBacterial outer membrane porin7e-34145
NC_021150:4929670:4951284495128449525521269Azotobacter vinelandii CA6, complete genomeouter membrane porin7e-34145
NC_020209:5077410:5080673508067350819741302Pseudomonas poae RE*1-1-14, complete genomeouter membrane protein, oprE32e-33144
NC_009512:5920960:5928954592895459301951242Pseudomonas putida F1, complete genomeouter membrane porin3e-33143
NC_007492:2994036:3012598301259830138991302Pseudomonas fluorescens PfO-1, complete genomeouter membrane porin4e-33142
NC_005773:176885:1828831828831841571275Pseudomonas syringae pv. phaseolicola 1448A, complete genomeouter membrane porin, OprD family5e-33142
NC_012560:1677798:1697161169716116983781218Azotobacter vinelandii DJ, complete genomeBacterial outer membrane porin2e-32140
NC_021150:1677811:1697174169717416983911218Azotobacter vinelandii CA6, complete genomeouter membrane porin2e-32140
NC_010501:5442000:5457529545752954588481320Pseudomonas putida W619, complete genomeouter membrane porin3e-31136
NC_009434:3434381:3462841346284134641151275Pseudomonas stutzeri A1501, complete genomeporin3e-31136
NC_017986:5833819:5859445585944558606831239Pseudomonas putida ND6 chromosome, complete genomeouter membrane porin5e-30132
NC_010501:3448389:3457520345752034587941275Pseudomonas putida W619, complete genomeouter membrane porin1e-29131
NC_015740:3486226:3490394349039434916561263Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein1e-29131
NC_009512:1518113:1531521153152115327471227Pseudomonas putida F1, complete genomeouter membrane porin1e-28127
NC_009439:1297851:1314978131497813163061329Pseudomonas mendocina ymp, complete genomeouter membrane porin3e-28126
NC_009439:4734237:4747711474771147490301320Pseudomonas mendocina ymp, complete genomeouter membrane porin2e-27124
NC_012560:5019900:5021653502165350229781326Azotobacter vinelandii DJ, complete genomeOprE-like outer membrane porin1e-27124
NC_021150:5019887:5021640502164050229651326Azotobacter vinelandii CA6, complete genomeOprE-like outer membrane porin1e-27124
NC_010501:4989455:4996865499686549981391275Pseudomonas putida W619, complete genomeouter membrane porin1e-27124
NC_021150:3200959:3222478322247832237971320Azotobacter vinelandii CA6, complete genomeOprE-like outer membrane porin9e-27121
NC_012560:3200961:3222480322248032237991320Azotobacter vinelandii DJ, complete genomeOprE-like outer membrane porin9e-27121
NC_012660:3320330:3339051333905133403041254Pseudomonas fluorescens SBW25 chromosome, complete genomeputative exported family S43 non-peptidase homologue9e-27121
NC_017986:2548720:2572480257248025737061227Pseudomonas putida ND6 chromosome, complete genomeouter membrane porin1e-24114
NC_010501:3671517:3682477368247736837901314Pseudomonas putida W619, complete genomeouter membrane porin5e-23109
NC_010611:240839:2467232467232481321410Acinetobacter baumannii ACICU, complete genomeputative outer membrane protein9e-1581.6
NC_016830:6499234:6514151651415165154701320Pseudomonas fluorescens F113 chromosome, complete genomeprotein OprD3e-1170.5