Pre_GI: BLASTP Hits

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Query: NC_004129:5723787:5732718 Pseudomonas fluorescens Pf-5, complete genome

Start: 5732718, End: 5735693, Length: 2976

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:165559:1966251966251995132889Pseudomonas fluorescens SBW25 chromosome, complete genomehypothetical protein01652
NC_013209:867500:8854638854638880242562Acetobacter pasteurianus IFO 3283-01, complete genomeDNA/RNA helicase6e-123442
NC_017100:867500:8854578854578880182562Acetobacter pasteurianus IFO 3283-03, complete genomeDNA/RNA helicase6e-123442
NC_017108:867500:8854578854578880182562Acetobacter pasteurianus IFO 3283-12, complete genomeDNA/RNA helicase6e-123442
NC_017111:867500:8854578854578880182562Acetobacter pasteurianus IFO 3283-32, complete genomeDNA/RNA helicase6e-123442
NC_017121:867500:8854578854578880182562Acetobacter pasteurianus IFO 3283-07, complete genomeDNA/RNA helicase6e-123442
NC_017125:867500:8854578854578880182562Acetobacter pasteurianus IFO 3283-22, complete genomeDNA/RNA helicase6e-123442
NC_017146:867500:8854578854578880182562Acetobacter pasteurianus IFO 3283-26, complete genomeDNA/RNA helicase6e-123442
NC_010125:3667452:3682362368236236848902529Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein5e-117422
NC_016027:1851737:1851737185173718543342598Gluconacetobacter xylinus NBRC 3288, complete genomeDNA/RNA helicase1e-112407
NC_007650:2429307:2455275245527524581422868Burkholderia thailandensis E264 chromosome II, complete sequenceDNA primase6e-104379
NC_008542:2631138:2632749263274926356252877Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceinner membrane protein2e-101371
NC_008060:1945597:1947208194720819500842877Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceinner membrane protein2e-101371
NC_006351:520500:5228525228525257192868Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein2e-101370
NC_009076:106807:1102561102561131082853Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein8e-101369
NC_009074:94000:9434694346971982853Burkholderia pseudomallei 668 chromosome I, complete sequencehypothetical protein1e-100368
NC_012724:3222415:3224293322429332271692877Burkholderia glumae BGR1 chromosome 1, complete genomeInner membrane protein3e-100367
NC_010508:2776283:2778117277811727809782862Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencePrimase 24e-100366
NC_009256:458649:4586494586494615252877Burkholderia vietnamiensis G4 chromosome 1, complete sequenceinner membrane protein7e-100365
NC_007434:1322500:1346373134637313492342862Burkholderia pseudomallei 1710b chromosome I, complete sequenceinner membrane protein2e-99364
NC_010511:915313:9192619192619220532793Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein9e-98358
NC_014121:1101093:1113609111360911162962688Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completezinc-binding domain of primase-helicase family protein1e-93345
NC_017033:2081206:2102598210259821043941797Frateuria aurantia DSM 6220 chromosome, complete genomeDNA/RNA helicase7e-93342
CP002797:2472908:2472908247290824755952688Escherichia coli NA114, complete genomeputative phage protein1e-92341
NC_011083:2542876:2556453255645325591402688Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,zinc-binding domain of primase-helicase family7e-92339
NC_011094:380428:3832303832303859022673Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-91337
NC_015968:3301958:3325863332586333285352673Enterobacter asburiae LF7a chromosome, complete genomehypothetical protein3e-91337
NC_012559:1635922:1653880165388016556671788Laribacter hongkongensis HLHK9, complete genomeinner membrane protein5e-91336
NC_011740:810411:8262408262408289122673Escherichia fergusonii ATCC 35469, complete genomePutative inner membrane protein (modular protein) from phage origin9e-91335
NC_013956:4326388:4327056432705643297282673Pantoea ananatis LMG 20103 chromosome, complete genomeAlpha5e-90333
NC_009778:2951207:2967702296770229701372436Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-88328
NC_011083:2847318:2858008285800828600772070Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative inner membrane protein4e-88327
NC_003197:2870268:2883501288350128855702070Salmonella typhimurium LT2, complete genomeputative inner membrane protein4e-88327
NC_016810:2871689:2906066290606629081352070Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein4e-88327
NC_016856:2896630:2903726290372629057952070Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein4e-88327
NC_016857:2871689:2906066290606629081352070Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein4e-88327
NC_016860:2896254:2907067290706729091362070Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein4e-88327
NC_016863:2844883:2851979285197928540482070Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein4e-88327
NC_017046:2896651:2904808290480829068772070Salmonella enterica subsp. enterica serovar Typhimurium str. 798inner membrane protein4e-88327
NC_015224:3291736:3306358330635833090422685Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,Zinc-binding domain of primase-helicase family8e-88325
NC_011751:3048490:3054619305461930566882070Escherichia coli UMN026 chromosome, complete genomehypothetical protein9e-87322
NC_011883:1422650:1438897143889714404441548Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,protein of unknown function DUF9273e-75283
NC_005085:4157257:4161249416124941629791731Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein1e-71271
NC_015061:1251905:1265618126561812682932676Rahnella sp. Y9602 chromosome, complete genomehypothetical protein2e-71271
NC_015379:1151143:117052111705211171060540Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein1e-69265
NC_016026:2170500:2181687218168721836962010Micavibrio aeruginosavorus ARL-13 chromosome, complete genomehypothetical protein5e-65250
NC_015381:992401:1007868100786810106602793Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-62242
NC_011894:672270:6759426759426774501509Methylobacterium nodulans ORS 2060, complete genome6e-59229
NC_012559:1635922:1652701165270116537831083Laribacter hongkongensis HLHK9, complete genomeinner membrane protein2e-54214
NC_015379:1151143:117004711700471170427381Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein5e-52206
NC_008322:373531:3856643856643873251662Shewanella sp. MR-7, complete genomeSuperfamily II helicase and inactivated derivatives-like protein7e-51203
NC_012559:2353236:2357067235706723588361770Laribacter hongkongensis HLHK9, complete genomeputative prophage primase5e-46186
NC_010694:2716348:2731726273172627345542829Erwinia tasmaniensis, complete genomePutative prophage primase3e-39164
NC_011094:638552:6579916579916601322142Salmonella enterica subsp. enterica serovar Schwarzengrund strP4 alpha zinc-binding domain-containing protein7e-39163
NC_014922:1360000:1361398136139813635902193Haemophilus influenzae F3047 chromosome, complete genomehypothetical protein7e-39163
NC_013892:671000:6938526938526965482697Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase2e-38161
NC_013592:2703327:2707294270729427099932700Dickeya dadantii Ech586, complete genomeprotein of unknown function DUF9274e-38160
NC_014500:3744705:3757707375770737603432637Dickeya dadantii 3937 chromosome, complete genomeDNA primase traC1e-37159
NC_012880:2778795:2782217278221727848532637Dickeya dadantii Ech703, complete genomeprotein of unknown function DUF9274e-37157
NC_013892:1272448:1299079129907913018532775Xenorhabdus bovienii SS-2004 chromosome, complete genomeprophage primase8e-37156
NC_014500:2019113:2039592203959220423602769Dickeya dadantii 3937 chromosome, complete genomeDNA primase traC7e-37156
NC_015566:4350080:4373105437310543752132109Serratia sp. AS12 chromosome, complete genomehypothetical protein5e-36153
CU928145:299080:3023023023023044342133Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein3e-35151
NC_011748:299080:3023023023023044342133Escherichia coli 55989, complete genomehypothetical protein3e-35151
NC_002663:1988000:2004283200428320064602178Pasteurella multocida subsp. multocida str. Pm70, complete genomehypothetical protein2e-29132
NC_007712:4023516:4054746405474640557921047Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein7e-24113
NC_009648:3224495:323941532394153240143729Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein8e-23110
NC_007712:2806500:281257128125712813332762Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-1998.6
NC_010172:280092:2811792811792829211743Methylobacterium extorquens PA1, complete genomeSuperfamily II helicase and inactivated derivatives-like protein3e-1997.8
NC_007005:98488:118370118370118735366Pseudomonas syringae pv. syringae B728a, complete genomehypothetical protein4e-1790.9
NC_015676:1530000:1539899153989915424302532Methanosalsum zhilinae DSM 4017 chromosome, complete genomehypothetical protein1e-1586.3
NC_012808:58701:7756377563792241662Methylobacterium extorquens AM1, complete genomehypothetical protein2e-1482.4
NC_010125:3667452:368205136820513682365315Gluconacetobacter diazotrophicus PAl 5, complete genomehypothetical protein3e-1378.2
NC_017146:867500:885077885077885460384Acetobacter pasteurianus IFO 3283-26, complete genomehypothetical protein4e-1377.8
NC_013209:867500:885083885083885466384Acetobacter pasteurianus IFO 3283-01, complete genomehypothetical protein4e-1377.8
NC_017100:867500:885077885077885460384Acetobacter pasteurianus IFO 3283-03, complete genomehypothetical protein4e-1377.8
NC_017108:867500:885077885077885460384Acetobacter pasteurianus IFO 3283-12, complete genomehypothetical protein4e-1377.8
NC_017111:867500:885077885077885460384Acetobacter pasteurianus IFO 3283-32, complete genomehypothetical protein4e-1377.8
NC_017121:867500:885077885077885460384Acetobacter pasteurianus IFO 3283-07, complete genomehypothetical protein4e-1377.8
NC_017125:867500:885077885077885460384Acetobacter pasteurianus IFO 3283-22, complete genomehypothetical protein4e-1377.8
NC_014614:2643203:2651210265121026530631854Clostridium sticklandii, complete genomehypothetical protein1e-1276.3
NC_014393:1022843:1027660102766010303412682Clostridium cellulovorans 743B chromosome, complete genomeBifunctional DNA primase/polymerase2e-1275.5
UCMB5137:140766:1613951613951638092415Bacillus atrophaeus UCMB-5137hypothetical protein7e-1273.6
NC_016027:1851737:185433818543381854640303Gluconacetobacter xylinus NBRC 3288, complete genomehypothetical protein5e-1170.9
NC_016048:3947663:3944818394481839476852868Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein7e-1170.5
NC_016818:1291665:130461313046131305110498Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, complete6e-1067
NC_012796:3374911:3419227341922734221392913Desulfovibrio magneticus RS-1, complete genomehypothetical protein7e-1067
NC_002978:549454:5641755641755662232049Wolbachia endosymbiont of Drosophila melanogaster, complete genomeregulatory protein RepA, putative7e-1067
NC_014307:233045:2474232474232495462124Ralstonia solanacearum CFBP2957 chromosome, complete genometoprim domain protein2e-0965.9
NC_012416:1079661:1111634111163411138292196Wolbachia sp. wRi, complete genomeregulatory protein RepA, putative1e-0863.2
NC_012416:573202:6051756051756073702196Wolbachia sp. wRi, complete genomeregulatory protein RepA, putative1e-0863.2
NC_002951:49535:4953549535513041770Staphylococcus aureus subsp. aureus COL, complete genomehypothetical protein2e-0758.9
NC_014624:2944437:2955376295537629572591884Eubacterium limosum KIST612 chromosome, complete genomeSuperfamily II helicase and inactivated derivatives-like2e-0758.5
NC_014624:1235818:1241220124122012431031884Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein2e-0758.5
NC_015761:2373967:2373967237396723770893123Salmonella bongori NCTC 12419, complete genomebacteriophage DNA primase7e-0757
NC_003295:856775:8796328796328819292298Ralstonia solanacearum GMI1000, complete genomehypothetical protein8e-0757