Pre_GI: BLASTP Hits

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Query: NC_017328:335160:342492 Shigella flexneri 2002017 chromosome, complete genome

Start: 342492, End: 343031, Length: 540

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007964:328825:334182334182334670489Nitrobacter hamburgensis X14, complete genomeHNH endonuclease2e-24112
NC_011601:717072:735907735907736335429Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeendonuclease2e-21101
NC_011035:541560:542831542831543349519Neisseria gonorrhoeae NCCP11945 chromosome, complete genomeputative phage associated protein3e-1788.2
NC_002946:1020175:106320710632071063725519Neisseria gonorrhoeae FA 1090, complete genomehypothetical protein, putative phage associated protein6e-1683.6
NC_007493:1672163:168911316891131689598486Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequenceputative endonuclease1e-1582.8
NC_011770:860944:871763871763872272510Pseudomonas aeruginosa LESB58, complete genomeEndY2e-1479
NC_012808:4078459:408567340856734086149477Methylobacterium extorquens AM1, complete genomeHNH endonuclease family protein2e-1478.6
NC_021182:2536000:254900225490022549733732Clostridium pasteurianum BC1, complete genomeAP2 domain-containing protein7e-1373.2
NC_011601:4856717:485836248583624858871510Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeendonuclease, HNH family2e-1271.6
NC_011770:2690501:272554427255442726101558Pseudomonas aeruginosa LESB58, complete genomehypothetical protein1e-1169.7
NC_007493:1672163:169739016973901697896507Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencePossible Endonuclease1e-1169.3
NC_002695:3468873:348963034896303490196567Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-1167.8
NC_013008:3525428:354861535486153549181567Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-1167.8
NC_013361:3112023:312237631223763122942567Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-1167.8
NC_013364:2645438:264601526460152646581567Escherichia coli O111:H- str. 11128, complete genomehypothetical protein4e-1167.8
NC_013364:2898964:291234129123412912907567Escherichia coli O111:H- str. 11128, complete genomeputative endonuclease4e-1167.8
NC_013282:1200993:121347112134711214031561Cronobacter turicensis, complete genomehypothetical protein3e-1167.8
NC_002655:3538656:355695335569533557558606Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933Y3e-1167.8
NC_014313:165490:171132171132171617486Hyphomicrobium denitrificans ATCC 51888 chromosome, completePathogenesis-related transcriptional factor and ERF protein4e-1167.4
NC_015563:3074691:308337130833713083862492Delftia sp. Cs1-4 chromosome, complete genomePathogenesis-related transcriptional factor and ERF protein8e-1166.6
NC_009255:1369200:137188513718851372367483Burkholderia vietnamiensis G4 chromosome 2, complete sequencepathogenesis-related transcriptional factor and ERF protein2e-1065.5
NC_017223:3608749:362717336271733627673501Bordetella pertussis CS chromosome, complete genomehypothetical protein9e-0959.7
NC_002929:3568106:358698835869883587488501Bordetella pertussis Tohama I, complete genomehypothetical protein9e-0959.7
NC_011001:2085986:210140821014082101989582Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative phage-related endonuclease2e-0858.9
NC_002927:2338549:236126123612612361761501Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-0858.9
NC_002927:3716894:373800537380053738505501Bordetella bronchiseptica RB50, complete genomehypothetical protein2e-0858.9
NC_016818:859181:872860872860873357498Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeHNH endonuclease3e-0858.2
NC_012914:1851102:186774018677401868279540Paenibacillus sp. JDR-2, complete genomePathogenesis-related transcriptional factor and ERF protein9e-0753.1
NC_009049:2131017:214029221402922140522231Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencePathogenesis-related transcriptional factor and ERF protein1e-0652.8
NC_016048:4047922:407294940729494073512564Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-0652
NC_014246:1457992:146055114605511461048498Mobiluncus curtisii ATCC 43063 chromosome, complete genomebacteriophage protein4e-0651.2