Pre_GI: BLASTP Hits

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Query: NC_016582:11734963:11737677 Streptomyces bingchenggensis BCW-1 chromosome, complete genome

Start: 11737677, End: 11738477, Length: 801

Host Lineage: Streptomyces bingchenggensis; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Streptomyces bingchenggensis BCW-1 was isolated from a soil sample collected in Harbin, China. This species produces milbemycins, a family of macrocyclic lactones widely used in human health, animal health, and crop protection. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013093:626473:641901641901642743843Actinosynnema mirum DSM 43827, complete genometransposase IS4 family protein1e-26120
NC_013093:3791912:380187738018773802719843Actinosynnema mirum DSM 43827, complete genometransposase IS4 family protein1e-26120
NC_013595:5282207:528863752886375288870234Streptosporangium roseum DSM 43021, complete genome8e-23107
NC_009953:3509229:352889135288913529673783Salinispora arenicola CNS-205 chromosome, complete genometransposase IS4 family protein3e-22105
NC_016582:1707756:171109517110951711499405Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein3e-21102
NC_013595:4031947:404173740417374042519783Streptosporangium roseum DSM 43021, complete genometransposase, IS4 family3e-2099
NC_009953:2281349:229667322966732297452780Salinispora arenicola CNS-205 chromosome, complete genometransposase IS4 family protein3e-1995.5
NC_014391:1910273:195317719531771953959783Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein3e-1685.5
NC_014815:1490957:150301915030191503801783Micromonospora sp. L5 chromosome, complete genometransposase is4 family protein3e-1685.5
NC_014391:1910273:193694619369461937728783Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein3e-1685.5
NC_015957:7348269:735203673520367352608573Streptomyces violaceusniger Tu 4113 chromosome, complete genome9e-1684
NC_014815:658893:667696667696668478783Micromonospora sp. L5 chromosome, complete genometransposase is4 family protein1e-1583.6
NC_014391:1910273:192410119241011924883783Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein2e-1582.8
NC_015953:3258000:326954132695413270368828Streptomyces sp. SirexAA-E chromosome, complete genometransposase IS4 family protein3e-1582.4
NC_010572:8493946:851584385158438516592750Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase3e-1375.9
NC_010572:1:293382933830087750Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase3e-1375.9
NC_003888:5790104:579673657967365797479744Streptomyces coelicolor A3(2), complete genometransposase8e-1374.3
NC_014391:6710500:673530267353026735982681Micromonospora aurantiaca ATCC 27029 chromosome, complete genometransposase IS4 family protein2e-1170.1
NC_013093:1036772:107730710773071078287981Actinosynnema mirum DSM 43827, complete genomehypothetical protein4e-1065.5
NC_003888:3817000:383069838306983831525828Streptomyces coelicolor A3(2), complete genometransposase3e-0962.8
NC_015957:5136500:514034151403415141090750Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase IS4 family protein4e-0755.5
NC_015957:5225903:523579152357915236495705Streptomyces violaceusniger Tu 4113 chromosome, complete genometransposase IS4 family protein1e-0653.5
NC_013093:626473:642843642843643604762Actinosynnema mirum DSM 43827, complete genometransposase IS4 family protein5e-0651.6