Pre_GI: BLASTP Hits

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Query: NC_013716:4885776:4900415 Citrobacter rodentium ICC168, complete genome

Start: 4900415, End: 4901131, Length: 717

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020063:528296:534555534555535268714Enterobacteriaceae bacterium strain FGI 57, complete genomeprepilin-type N-terminal cleavage/methylation domain-containing protein8e-89326
NC_017047:4379989:438513443851344385832699Rahnella aquatilis HX2 chromosome, complete genomeToxin-coregulated pilus subunit TcpA3e-43175
NC_015061:4286000:429124842912484291946699Rahnella sp. Y9602 chromosome, complete genomeToxin-coregulated pilus subunit TcpA3e-43175
NC_015761:299386:330060330060330806747Salmonella bongori NCTC 12419, complete genometype IV major pilin2e-31135
NC_014618:1040381:105183210518321052554723Enterobacter cloacae SCF1 chromosome, complete genomeToxin-coregulated pilus subunit TcpA1e-22106
NC_009457:351512:381188381188381862675Vibrio cholerae O395 chromosome 2, complete sequencetoxin co-regulated pilin8e-1064.3
NC_012668:2744393:277268127726812773355675Vibrio cholerae MJ-1236 chromosome 1, complete sequencetoxin co-regulated pilin A5e-0961.6