Pre_GI Gene

Some Help

Host: NC_012668 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_012668:2744393 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
27443932745277885inorganic polyphosphateATP-NAD kinaseQuickGO ontologyBLASTP
274538327470711689recombination and repair proteinQuickGO ontologyBLASTP
27471792747589411lipoprotein SmpA a component of the essential YaeT outer-membrane protein assembly complexQuickGO ontologyBLASTP
27476672747978312hypothetical proteinBLASTP
27479752748415441hypothetical proteinBLASTP
27485932749078486SsrA-binding proteinQuickGO ontologyBLASTP
27516672751825159phage integraseQuickGO ontologyBLASTP
275286327574254563accessory colonization factor AcfD precursorQuickGO ontologyBLASTP
27575982758245648accessory colonization factor AcfAQuickGO ontologyBLASTP
27582482759156909TagE proteinQuickGO ontologyBLASTP
27596542760424771accessory colonization factor AcfCQuickGO ontologyBLASTP
276043027623101881accessory colonization factor AcfBQuickGO ontologyBLASTP
27623172763078762TCP pilin signal peptidase TcpA processingQuickGO ontologyBLASTP
27630782763908831AraC family transcriptional regulatorQuickGO ontologyBLASTP
276411527651311017toxin co-regulated pilus biosynthesis protein FQuickGO ontologyBLASTP
276514127661631023toxin co-regulated pilus biosynthesis protein E anchors TcpT to membraneQuickGO ontologyBLASTP
276613827676491512toxin co-regulated pilus biosynthesis protein TQuickGO ontologyBLASTP
27676392768097459toxin co-regulated pilus biosynthesis protein SQuickGO ontologyBLASTP
27681132768949837toxin co-regulated pilus biosynthesis protein DQuickGO ontologyBLASTP
27689372769392456toxin co-regulated pilus biosynthesis protein RQuickGO ontologyBLASTP
276938527708541470toxin co-regulated pilus biosynthesis protein CQuickGO ontologyBLASTP
27708572771309453toxin co-regulated pilus biosynthesis protein QQuickGO ontologyBLASTP
277130927726011293toxin co-regulated pilus biosynthesis protein BQuickGO ontologyBLASTP
27726812773355675toxin co-regulated pilin AQuickGO ontologyBLASTP
27738982774308411toxin co-regulated pilus biosynthesis protein H transcriptional activator of ToxT promoterQuickGO ontologyBLASTP
27742932774958666toxin co-regulated pilus biosynthesis protein P transcriptional activator of ToxT promoterQuickGO ontologyBLASTP
277539927772611863toxin co-regulated pilus biosynthesis protein I chemoreceptor negative regulator of TcpAQuickGO ontologyBLASTP
27775372778031495thiol peroxidaseQuickGO ontologyBLASTP
27781412779079939hypothetical proteinBLASTP
277907627836774602hypothetical proteinBLASTP
278379027868313042ToxR-activated gene A proteinQuickGO ontologyBLASTP
278690627885311626aldehyde dehydrogenaseQuickGO ontologyBLASTP
27895792790562984transposaseQuickGO ontologyBLASTP
279115427925211368hypothetical proteinBLASTP
27925182792985468hypothetical proteinBLASTP
27934132793991579tellurite resistance protein-related proteinQuickGO ontologyBLASTP
279399527969312937helicase-related proteinQuickGO ontologyBLASTP
27970012797705705hypothetical proteinBLASTP
279874628004371692hypothetical proteinBLASTP
28006482801331684hypothetical proteinBLASTP
280139928030151617NADFAD-utilizing dehydrogenaseQuickGO ontologyBLASTP