Pre_GI: BLASTP Hits

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Query: NC_012917:1506083:1539071 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 1539071, End: 1539748, Length: 678

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:3279499:328029132802913280968678Pectobacterium wasabiae WPP163, complete genomeputative lipoprotein6e-116416
NC_008750:1659095:167870716787071679417711Shewanella sp. W3-18-1, complete genomelipoprotein, putative2e-43176
NC_008322:1595500:162730916273091628019711Shewanella sp. MR-7, complete genomelipoprotein, putative1e-42172
NC_008321:1523323:155589915558991556609711Shewanella sp. MR-4, complete genomelipoprotein, putative2e-42172
NC_008570:3220539:323006032300603230749690Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein1e-37156
NC_015633:461143:462009462009462707699Vibrio anguillarum 775 chromosome chromosome I, complete sequenceWbfD8e-33140
NC_016602:103878:144149144149144826678Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceWbfD protein4e-30131
NC_009783:670449:670449670449671123675Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein6e-30130
NC_009654:866124:869141869141869845705Marinomonas sp. MWYL1, complete genomeputative regulator6e-21100
NC_015061:3840463:390294539029453903601657Rahnella sp. Y9602 chromosome, complete genomelipoprotein YmcC3e-2098.6
NC_016818:3887000:391359339135933914249657Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein9e-1993.6
NC_015497:1287877:133123113312311331929699Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomehypothetical protein3e-1892
NC_007492:4310828:433379243337924334457666Pseudomonas fluorescens PfO-1, complete genomehypothetical protein3e-1788.6
NC_016147:1435000:145320614532061453838633Pseudoxanthomonas spadix BD-a59 chromosome, complete genomelipoprotein2e-1685.9
NC_008228:3841897:384411238441123844786675Pseudoalteromonas atlantica T6c, complete genomehypothetical protein1e-1376.6
NC_014924:3270547:327853332785333279165633Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeputative lipoprotein2e-1272.8