Pre_GI: BLASTP Hits

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Query: NC_012125:4481808:4495987 Salmonella enterica subsp. enterica serovar Paratyphi C strain

Start: 4495987, End: 4496121, Length: 135

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The genome of this strain harbors a large pathogenicity island, SPI7, with genes coding for the Vi (virulence) antigen and other genes potentially associated with virulence. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:4486433:450061245006124500746135Salmonella enterica subsp. enterica serovar Choleraesuis strail and ompX Homolog7e-1785.9
NC_011149:4474012:448809744880974488231135Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-1684.7
NC_016831:4367000:437925443792544379388135Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-1684.3
NC_011294:4409137:442120544212054421339135Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein2e-1684.3
NC_011205:4564645:457842445784244578558135Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-1684.3
NC_011274:4385039:439910943991094399243135Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein7e-1682.4
NC_017046:4571833:458362545836254583759135Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-1581.6
NC_016810:4573172:458496445849644585098135Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-1581.6
NC_011083:4547825:456187745618774562011135Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,ail and OmpX Homolog1e-1581.6
NC_011080:4543000:456532045653204565454135Salmonella enterica subsp. enterica serovar Newport str. SL254,ail and OmpX Homolog5e-1579.7
NC_016832:4368948:438072443807244380858135Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein7e-1475.9