Pre_GI: BLASTP Hits

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Query: NC_011094:638552:655441 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 655441, End: 655761, Length: 321

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011748:2655989:267148226714822672261780Escherichia coli 55989, complete genomehypothetical protein from phage1e-25115
CU928145:2655989:267148226714822672261780Escherichia coli 55989 chromosome, complete genomehypothetical protein from phage1e-25115
NC_015761:1017301:101730110173011018047747Salmonella bongori NCTC 12419, complete genomephage-like protein6e-25112
NC_013353:2911741:291876929187692919512744Escherichia coli O103:H2 str. 12009, complete genomeantirepressor protein1e-1685.5
AP010958:2911741:291876929187692919512744Escherichia coli O103:H2 str. 12009 DNA, complete genomeantirepressor protein1e-1685.5
NC_007712:2897000:289757528975752898336762Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-1580.5
NC_009800:320115:327868327868328461594Escherichia coli HS, complete genomehypothetical protein1e-1271.6