Pre_GI: BLASTP Hits

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Query: NC_011080:333121:339872 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 339872, End: 340318, Length: 447

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:329847:337305337305337751447Salmonella enterica subsp. enterica serovar Typhimurium str. 798SPI-6 associated protein8e-82301
NC_003197:332086:337829337829338275447Salmonella typhimurium LT2, complete genomeputative cytoplasmic protein8e-82301
NC_011094:334267:338804338804339250447Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein8e-82301
NC_016810:329849:337307337307337753447Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein8e-82301
NC_016856:332771:338514338514338960447Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative cytoplasmic protein8e-82301
NC_016857:329849:337307337307337753447Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative cytoplasmic protein8e-82301
NC_016860:332087:337830337830338276447Salmonella enterica subsp. enterica serovar Typhimurium strputative cytoplasmic protein8e-82301
NC_016863:332060:337803337803338249447Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative cytoplasmic protein8e-82301
NC_018868:2867500:287553828755382875981444Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein6e-0856.2
NC_013720:3925756:394173839417383942196459Pirellula staleyi DSM 6068, complete genomehypothetical protein8e-0752.8