Pre_GI: BLASTP Hits

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Query: NC_010322:1817598:1854461 Pseudomonas putida GB-1 chromosome, complete genome

Start: 1854461, End: 1856713, Length: 2253

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:5336773:5378945537894553810412097Pseudomonas syringae pv. tomato str. DC3000, complete genomesite-specific recombinase, phage integrase family domain protein8e-46185
NC_010322:5349000:5355799535579953579012103Pseudomonas putida GB-1 chromosome, complete genomeintegrase family protein1e-41172
NC_020209:4312892:4341256434125643433372082Pseudomonas poae RE*1-1-14, complete genomeintegrase family protein5e-39163
NC_015633:2565753:2593364259336425954902127Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein5e-26120
NC_018080:6048516:6087387608738760893511965Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein1e-1068.9
NC_007951:1042291:1051515105151510537042190Burkholderia xenovorans LB400 chromosome 1, complete sequencehypothetical protein1e-0862.8
NC_015554:1653614:1670498167049816722941797Alteromonas sp. SN2 chromosome, complete genomehypothetical protein4e-0757.4