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Query: NC_009800:3224575 Escherichia coli HS, complete genome

Start: 3224575, End: 3245216, Length: 20642

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (HS; serotype O9) is a human commensal that was originally isolated from a laboratory scientist at Walter Reed Army Institute of Research in 1978 (Levine, 1978). Strain HS colonizes the human gastrointestinal tract in challenge experiments, but no overt signs of disease occur. Thus, this strain represents a genomic baseline for human gastrointestinal tract colonization. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010468:69494369494371914224200Escherichia coli ATCC 8739, complete genome024400BLASTN svgBLASTP svg
NC_011750:36837603683760370613422375Escherichia coli IAI39 chromosome, complete genome022750BLASTN svgBLASTP svg
AP010958:37879913787991381070122711Escherichia coli O103:H2 str. 12009 DNA, complete genome021220BLASTN svgBLASTP svg
CP002516:69370369370371389120189Escherichia coli KO11, complete genome021190BLASTN svgBLASTP svg
CP002185:3393813*3393813341586022048Escherichia coli W, complete genome021190BLASTN svgBLASTP svg
CU928145:35299303529930355057820649Escherichia coli 55989 chromosome, complete genome020860BLASTN svgBLASTP svg
NC_011748:35299303529930355057820649Escherichia coli 55989, complete genome020860BLASTN svgBLASTP svg
NC_009801:35114443511444352932517882Escherichia coli E24377A, complete genome019880BLASTN svgBLASTP svg
CU928160:32632483263248328331520068Escherichia coli IAI1 chromosome, complete genome019770BLASTN svgBLASTP svg
AC_000091:31802753180275319962119347Escherichia coli W3110 DNA, complete genome013650BLASTN svgBLASTP svg
NC_000913:3176000*3176000319898722988Escherichia coli K12, complete genome013650BLASTN svgBLASTP svg
NC_010473:3273882*3273882329673222851Escherichia coli str. K-12 substr. DH10B, complete genome013650BLASTN svgBLASTP svg
NC_015663:49500004950000501991769918Enterobacter aerogenes KCTC 2190 chromosome, complete genome1e-29139BLASTN svgBLASTP svg
NC_008740:87611587611590015424040Marinobacter aquaeolei VT8, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_000907:15688671568867160375334887Haemophilus influenzae Rd KW20, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_015740:40724154072415409719824784Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_012913:1832500*1832500186405931560Aggregatibacter aphrophilus NJ8700, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013416:15883691588369161218823820Aggregatibacter actinomycetemcomitans D11S-1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014377:1897857*1897857192617728321Thermosediminibacter oceani DSM 16646 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_004129:5204500*5204500522581521316Pseudomonas fluorescens Pf-5, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_001263:132288*13228815896226675Deinococcus radiodurans R1 chromosome 1, complete sequence1e-0560BLASTN svgBLASTP svg