Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:5204500 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
520485652071832328hypothetical protein
520717452084151242hypothetical proteinBLASTP
52084235209082660hypothetical proteinBLASTP
52097405209979240hypothetical protein
52100035210182180hypothetical protein
52111185211444327alginate biosynthesis transcriptional activatorQuickGO ontologyBLASTP
521155452129961443magnesium transporterQuickGO ontologyBLASTP
52128475213062216hypothetical protein
5213418521349477tRNA-ArgQuickGO ontologyBLASTP
5213567521364377tRNA-ArgQuickGO ontologyBLASTP
52139045214092189carbon storage regulatorQuickGO ontologyBLASTP
521428052155211242aspartate kinaseQuickGO ontologyBLASTP
521561952182432625alanyl-tRNA synthetaseQuickGO ontologyBLASTP
521839052193941005threonine aldolase low-specificityQuickGO ontologyBLASTP
52199055220414510riboflavin synthase subunit betaQuickGO ontologyBLASTP
522047352214831011succinylglutamate desuccinylaseQuickGO ontologyBLASTP
52214975221784288hypothetical proteinBLASTP
522184152231871347succinylarginine dihydrolaseQuickGO ontologyBLASTP
522332452247901467succinylglutamic semialdehyde dehydrogenaseQuickGO ontologyBLASTP
522478752258151029arginine N-succinyltransferase beta subunitQuickGO ontologyBLASTP