Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4665672 Kineococcus radiotolerans SRS30216, complete genome

Start: 4665672, End: 4666370, Length: 699

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015474:252390:255828255828256328501Pyrococcus sp. NA2 chromosome, complete genomeintracellular protease4e-29128
NC_000961:1481685:149749014974901497990501Pyrococcus horikoshii OT3, complete genomeintracellular proteinase2e-28125
NC_012881:3004784:302938630293863029907522Desulfovibrio salexigens DSM 2638, complete genomeintracellular protease, PfpI family8e-25113
NC_014614:356746:375197375197375697501Clostridium sticklandii, complete genomeIntracellular protease 1 (Intracellular protease I)4e-24111
NC_009051:2097271:212186621218662122420555Methanoculleus marisnigri JR1, complete genomeintracellular protease, PfpI family1e-23110
NC_011832:2668337:268854626885462689064519Candidatus Methanosphaerula palustris E1-9c, complete genomeintracellular protease, PfpI family6e-24110
NC_018681:441014:444427444427444972546Nocardia brasiliensis ATCC 700358 chromosome, complete genomehypothetical protein5e-24110
NC_014761:516981:529346529346529855510Oceanithermus profundus DSM 14977 chromosome, complete genomeintracellular protease, pfpi family2e-23109
NC_014931:6203872:622084262208426221414573Variovorax paradoxus EPS chromosome, complete genomeintracellular protease, PfpI family4e-23108
NC_015277:380624:394511394511395071561Sphingobacterium sp. 21 chromosome, complete genomeintracellular protease, PfpI family4e-23108
NC_009725:2784334:279860427986042799113510Bacillus amyloliquefaciens FZB42, complete genomeYraA1e-22106
NC_004193:375416:542282542282542806525Oceanobacillus iheyensis HTE831, complete genomeintracellular proteinase1e-21103
NC_018524:4988810:499194249919424992484543Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeprotease I2e-21102
NC_016111:1546505:154904615490461549615570Streptomyces cattleya NRRL 8057, complete genomeIntracellular protease 15e-21101
NC_015161:2060369:207734620773462077915570Deinococcus proteolyticus MRP chromosome, complete genomeintracellular protease, PfpI family3e-2099
NC_017955:3731480:377152737715273772102576Modestobacter marinus, complete genomeintracellular protease, PfpI family4e-2098.2
NC_013791:1507943:152278015227801523301522Bacillus pseudofirmus OF4 chromosome, complete genomePfpI family intracellular peptidase1e-1996.3
NC_014311:3076519:312705731270573127635579Ralstonia solanacearum PSI07 chromosome, complete genomepeptidase C569e-1993.6
NC_010322:3315024:333814333381433338685543Pseudomonas putida GB-1 chromosome, complete genomePfpI family intracellular peptidase9e-1993.6
NC_007795:1922000:192232219223221922837516Staphylococcus aureus subsp. aureus NCTC 8325, complete genomehypothetical protein1e-1893.2
NC_009641:1979053:197905319790531979568516Staphylococcus aureus subsp. aureus str. Newman chromosome,ThiJ/PfpI family protein1e-1893.2
NC_017341:1976000:197731519773151977830516Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,intracellular protease1e-1893.2
NC_009674:3073564:309182030918203092374555Bacillus cytotoxicus NVH 391-98 chromosome, complete genomePfpI family intracellular peptidase3e-1892.4
NC_017192:683493:701188701188701754567Arcobacter sp. L, complete genomepeptidase3e-1892
NC_006361:4521820:452332645233264523883558Nocardia farcinica IFM 10152, complete genomeputative protease4e-1891.7
NC_016114:648422:650946650946651512567Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePfpi family intracellular protease1e-1790.1
NC_014299:82584:134085134085134639555Halalkalicoccus jeotgali B3 plasmid 2, complete sequenceintracellular protease, PfpI family protein1e-1789.7
NC_013510:3324978:333931733393173339895579Thermomonospora curvata DSM 43183, complete genomeintracellular protease, PfpI family1e-1789.7
NC_017047:2079368:209201820920182092593576Rahnella aquatilis HX2 chromosome, complete genomepeptidase C56, PfpI2e-1789.4
NC_017223:51180:634746347464055582Bordetella pertussis CS chromosome, complete genomehypothetical protein4e-1788.2
NC_002929:52500:634746347464055582Bordetella pertussis Tohama I, complete genomehypothetical protein4e-1788.2
NC_016612:5231065:527763852776385278213576Klebsiella oxytoca KCTC 1686 chromosome, complete genomepeptidase C56, PfpI5e-1787.8
NC_020181:969599:991537991537992103567Enterobacter aerogenes EA1509E, complete genomeThiJ/PfpI family protein8e-1787.4
NC_002928:507749:550723550723551304582Bordetella parapertussis 12822, complete genomehypothetical protein9e-1787
NC_014844:511552:534051534051534638588Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeintracellular protease, PfpI family1e-1686.7
NC_019748:763011:782537782537783145609Stanieria cyanosphaera PCC 7437, complete genomeintracellular protease, PfpI family1e-1686.7
NC_013173:1259898:125989812598981260476579Desulfomicrobium baculatum DSM 4028, complete genomeintracellular protease, PfpI family2e-1686.3
NC_002927:506183:552063552063552644582Bordetella bronchiseptica RB50, complete genomehypothetical protein3e-1685.1
NC_014831:2201246:220471922047192205282564Thermaerobacter marianensis DSM 12885 chromosome, complete genomeintracellular protease, PfpI family4e-1685.1
NC_017167:2647655:265956526595652660119555Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1Pfpi family intracellular protease2e-1582.8
NC_008536:2717891:272928327292832729852570Solibacter usitatus Ellin6076, complete genomeintracellular protease, PfpI family3e-1582
NC_014654:1:211102111021631522Halanaerobium sp. 'sapolanicus' chromosome, complete genomeThiJ/PfpI domain-containing protein7e-1580.9
NC_010617:55493:651266512665716591Kocuria rhizophila DC2201, complete genomePfpI family peptidase2e-1479.3
NC_010510:339879:353090353090353659570Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeintracellular protease, PfpI family2e-1479.3
NC_019964:1873167:188107518810751881629555Halovivax ruber XH-70, complete genomeintracellular protease, PfpI family2e-1479.3
NC_008312:3728329:374032637403263740901576Trichodesmium erythraeum IMS101, complete genomeintracellular protease, PfpI family3e-1479
NC_007520:1940120:194539319453931945950558Thiomicrospira crunogena XCL-2, complete genomeDJ-13e-1479
NC_009850:566755:579811579811580377567Arcobacter butzleri RM4018, complete genomepeptidase, ThiJ/PfpI family protein3e-1478.6
NC_016845:2274500:228017822801782280666489Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative intracellular protease/amidase8e-1477.4
NC_007705:1388607:141618414161841416510327Xanthomonas oryzae pv. oryzae MAFF 311018, complete genomehypothetical protein3e-1375.5
NC_009654:3316458:332973333297333330302570Marinomonas sp. MWYL1, complete genomePfpI family intracellular peptidase3e-1375.5
NC_006834:1414113:144183514418351442164330Xanthomonas oryzae pv. oryzae KACC10331, complete genomeprotease3e-1375.5
NC_004431:4270305:431477743147774315388612Escherichia coli CFT073, complete genomehypothetical protein5e-1374.7
NC_007355:4740161:476023247602324760801570Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceputative intracellular protease4e-1271.6
NC_019792:3027515:304463930446393045229591Natronobacterium gregoryi SP2 chromosome, complete genomePfpi family intracellular protease5e-1271.2
NC_006138:2630338:263522426352242635919696Desulfotalea psychrophila LSv54, complete genomesimilar to NonF protein2e-1169.3
NC_010794:1673049:169243716924371693018582Methylacidiphilum infernorum V4, complete genomePutative intracellular protease/amidase4e-1064.7
NC_015682:1074263:107771610777161078309594Thermodesulfobacterium sp. OPB45 chromosome, complete genomeThiJ/PfpI domain-containing protein6e-1064.3
NC_021182:2965395:297002429700242970590567Clostridium pasteurianum BC1, complete genomeDJ-1 family protein1e-0963.5
NC_007955:1:191411914119665525Methanococcoides burtonii DSM 6242, complete genomeThiJ/PfpI2e-0962.8
NC_012925:1357783:136173013617301362269540Streptococcus suis P1/7, complete genomeDJ-1/PfpI family protein3e-0858.9
NC_012924:1446190:145013714501371450676540Streptococcus suis SC84, complete genomeDJ-1/PfpI family protein3e-0858.9
NC_012926:1496510:150045715004571500996540Streptococcus suis BM407 chromosome, complete genomeDJ-1/PfpI family protein3e-0858.9
NC_009443:1445936:144988114498811450429549Streptococcus suis 98HAH33, complete genomeintracellular protease/amidase4e-0858.5
NC_009442:1446508:145045514504551451003549Streptococcus suis 05ZYH33 chromosome, complete genomeintracellular protease/amidase4e-0858.5
NC_013171:312500:325596325596326180585Anaerococcus prevotii DSM 20548, complete genomeDJ-1 family protein5e-0858.2
NC_013851:3392644:341080334108033411354552Allochromatium vinosum DSM 180 chromosome, complete genomeDJ-1 family protein7e-0857.8
NC_008609:2254392:2278418227841822795841167Pelobacter propionicus DSM 2379, complete genomemetal dependent phosphohydrolase7e-0857.8
NC_010718:2265447:229220322922032292811609Natranaerobius thermophilus JW/NM-WN-LF, complete genomeThiJ/PfpI domain protein9e-0857.4
NC_013665:2074587:208355020835502084110561Methanocella paludicola SANAE, complete genomehypothetical protein1e-0756.6
NC_011000:1023800:102931910293191030002684Burkholderia cenocepacia J2315 chromosome 1, complete sequenceDJ-1/PfpI family protein3e-0755.5
NC_016109:62000:108553108553109164612Kitasatospora setae KM-6054, complete genomeputative peptidase C56 family protein7e-0754.3
NC_016109:8664974:867411586741158674726612Kitasatospora setae KM-6054, complete genomeputative peptidase C56 family protein7e-0754.3
NC_000911:1191445:119185611918561192452597Synechocystis sp. PCC 6803, complete genomehypothetical protein1e-0653.9
NC_017039:1192111:119211111921111192707597Synechocystis sp. PCC 6803 substr. PCC-P, complete genomehypothetical protein1e-0653.9
NC_017052:1192099:119209911920991192695597Synechocystis sp. PCC 6803 substr. PCC-N, complete genomehypothetical protein1e-0653.9
NC_014222:799229:808760808760809278519Methanococcus voltae A3 chromosome, complete genomeintracellular protease, PfpI family1e-0653.9
NC_018876:168207:207427207427207969543Methanolobus psychrophilus R15 chromosome, complete genomeThiJ/PfpI domain protein9e-0753.9
NC_007645:829500:8408168408168418501035Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain3e-0652
NC_015376:3320818:333425833342583334935678Burkholderia gladioli BSR3 chromosome chromosome 2, completeNonF-related protein3e-0652
NC_015138:693865:699260699260699952693Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeThiJ/PfpI domain-containing protein4e-0651.6
NC_020453:7826358:785114778511477851818672Agromonas oligotrophica S58 DNA, complete genomeputative intracellular protease/amidase5e-0651.2
NC_004369:531579:558983558983559948966Corynebacterium efficiens YS-314, complete genomehypothetical protein9e-0650.4