Pre_GI: BLASTP Hits

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Query: NC_009565:1629780:1649000 Mycobacterium tuberculosis F11, complete genome

Start: 1649000, End: 1650775, Length: 1776

Host Lineage: Mycobacterium tuberculosis; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This strain (genotype F11) represents the largest portion of isolates recovered from tuberculosis patients during a TB epidemic in the Western Cape of South Africa. Causative agent of tuberculosis. Like other closely related Actinomycetales, such as Nocardia and Corynebacterium, mycobacteria have unusually high genomic DNA GC content and are capable of producing mycolic acids as major components of their cell wall. This bacterium is the causative agent of tuberculosis - a chronic infectious disease with a growing incidence worldwide. It infects 1.7 billion people a year (~33% of the entire world population) and causes over 3 million deaths/year. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. This bacterium does not form a polysaccharide capsule, and is an extremely slow growing obligate aerobe. The sluggish growth rate is a result of the tough cell wall that resists the passage of nutrients into the cell and inhibits waste products to be excreted out of the cell. The specialized cell envelope of this organism resembles a modified Gram positive cell wall. It also contains complex fatty acids, such as mycolic acids, that cause the waxy appearance and impermeability of the envelope. These acids are found bound to the cell envelope, but also form cord factors when linked with a carbohydrate component to form a cord-like structure. Primary infection occurs by inhalation of the organism in droplets that are aerosolized by an infected person. The organism initially replicates in cells of the terminal airways, after which it is taken up by, and replicates in, alveolar macrophages. Macrophages distribute the organism to other areas of the lungs and the regional lymph nodes. Once a cell-mediated hypersensitivity immune response develops, replication of the organism decreases and the bacteria become restricted to developing granulomas.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002945:1621765:1641109164110916428841776Mycobacterium bovis AF2122/97, complete genomeintegral membrane protein0934
NC_015848:1647523:1668516166851616702911776Mycobacterium canettii CIPT 140010059, complete genomeputative integral membrane protein0934
NC_016768:2764000:2764001276400127657761776Mycobacterium tuberculosis KZN 4207 chromosome, complete genomehypothetical protein0931
NC_012522:7596039:7626713762671376284971785Rhodococcus opacus B4, complete genomemannosyltransferase MptB2e-117423
NC_016781:1169632:1191578119157811934161839Corynebacterium pseudotuberculosis 3/99-5 chromosome, completehypothetical protein2e-52207
NC_014329:1169674:1191620119162011934581839Corynebacterium pseudotuberculosis FRC41 chromosome, completealpha(1-->6) mannopyranosyltransferase1e-52207
NC_016782:1251796:1279224127922412811131890Corynebacterium diphtheriae 241 chromosome, complete genomehypothetical protein3e-50200
NC_016786:1251765:1279193127919312810821890Corynebacterium diphtheriae HC01 chromosome, complete genomehypothetical protein3e-50200
NC_016799:1268706:1335007133500713365691563Corynebacterium diphtheriae 31A chromosome, complete genomehypothetical protein2e-50200
NC_016787:1240000:1268643126864312705321890Corynebacterium diphtheriae HC03 chromosome, complete genomehypothetical protein2e-50200
NC_016790:1218596:1246022124602212479111890Corynebacterium diphtheriae VA01 chromosome, complete genomehypothetical protein2e-50200
NC_016800:1243000:1307792130779213096811890Corynebacterium diphtheriae BH8 chromosome, complete genomehypothetical protein2e-50200
NC_016783:1274000:1303524130352413054131890Corynebacterium diphtheriae INCA 402 chromosome, complete genomehypothetical protein2e-50200
NC_016788:1214026:1278634127863412805231890Corynebacterium diphtheriae HC04 chromosome, complete genomehypothetical protein2e-50200
NC_016789:1295918:1325030132503013269191890Corynebacterium diphtheriae PW8 chromosome, complete genomehypothetical protein2e-50200
NC_016802:1256287:1280125128012512820141890Corynebacterium diphtheriae HC02 chromosome, complete genomehypothetical protein4e-50199
NC_002935:1237585:1305862130586213074241563Corynebacterium diphtheriae NCTC 13129, complete genomehypothetical protein6e-50199
NC_016785:1233384:1260811126081112627001890Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomehypothetical protein7e-50199
NC_016799:1667338:1683746168374616852331488Corynebacterium diphtheriae 31A chromosome, complete genomehypothetical protein8e-31135
NC_016783:1636820:1653229165322916547161488Corynebacterium diphtheriae INCA 402 chromosome, complete genomehypothetical protein2e-30134
NC_016787:1605536:1621942162194216234291488Corynebacterium diphtheriae HC03 chromosome, complete genomehypothetical protein2e-30134
NC_016785:1586546:1602961160296116044481488Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomehypothetical protein2e-30134
NC_016800:1639373:1655779165577916572661488Corynebacterium diphtheriae BH8 chromosome, complete genomehypothetical protein4e-30133
NC_016790:1581411:1597817159781715993041488Corynebacterium diphtheriae VA01 chromosome, complete genomehypothetical protein5e-30132
NC_016788:1609011:1625418162541816269051488Corynebacterium diphtheriae HC04 chromosome, complete genomehypothetical protein5e-30132
NC_013159:2098500:2118082211808221197221641Saccharomonospora viridis DSM 43017, complete genomehypothetical protein5e-27122
NC_010617:92000:1056991056991072641566Kocuria rhizophila DC2201, complete genomehypothetical protein3e-26120
NC_014643:1986440:1992166199216619938091644Rothia dentocariosa ATCC 17931 chromosome, complete genomehypothetical protein3e-20100
NC_021064:303635:3236343236343252441611Propionibacterium avidum 44067, complete genomeputative transporter9e-1789