Pre_GI: BLASTP Hits

Some Help

Query: NC_009089:370555:384319 Clostridium difficile 630, complete genome

Start: 384319, End: 385056, Length: 738

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013316:371953:385716385716386453738Clostridium difficile R20291, complete genomeputative ABC transporter, permease protein2e-136484
NC_013316:2033906:204964420496442050429786Clostridium difficile R20291, complete genomeputative lantibiotic abc transporter, permease protein6e-0961.2
NC_009089:1283000:128833512883351289144810Clostridium difficile 630, complete genomeputative lantibiotic ABC transporter, permease protein1e-0860.5
NC_009089:370555:383535383535384308774Clostridium difficile 630, complete genomeputative ABC transporter, permease protein3e-0755.8
NC_013316:371953:384932384932385705774Clostridium difficile R20291, complete genomeputative ABC transporter, permease protein4e-0755.5
NC_013316:2033906:205043220504322051211780Clostridium difficile R20291, complete genomeputative lantibiotic abc transporter, permease protein7e-0754.3