Pre_GI: BLASTP Hits

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Query: NC_009089:1:32149 Clostridium difficile 630, complete genome

Start: 32149, End: 32234, Length: 86

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:1:30318303183040386Clostridium difficile 630, complete genometRNA-Leu1e-0858.5
NC_009089:117980:14687914687914696486Clostridium difficile 630, complete genometRNA-Leu1e-0858.5
NC_009089:117980:15228115228115236686Clostridium difficile 630, complete genometRNA-Leu1e-0858.5
NC_014376:693820:71032671032671041186Clostridium saccharolyticum WM1 chromosome, complete genometRNA-Leu1e-0652
NC_009922:2590317:25981522598152259824089Alkaliphilus oremlandii OhILAs, complete genometRNA-Leu2e-0651.2
NC_009922:2590317:26047922604792260488089Alkaliphilus oremlandii OhILAs, complete genometRNA-Leu2e-0651.2
NC_009922:1917271:19242391924239192432789Alkaliphilus oremlandii OhILAs, complete genometRNA-Leu2e-0651.2
NC_008262:784878:79983179983179991989Clostridium perfringens SM101, complete genometRNA-Leu3e-0650.4
NC_008262:2649289:26986812698681269876989Clostridium perfringens SM101, complete genometRNA-Leu3e-0650.4
NC_003366:842000:85702885702885711386Clostridium perfringens str. 13, complete genome3e-0650.4
NC_008262:2649289:26981462698146269823489Clostridium perfringens SM101, complete genometRNA-Leu8e-0649.3
NC_008262:2649289:26984142698414269850289Clostridium perfringens SM101, complete genometRNA-Leu8e-0649.3
NC_010001:434803:45210745210745219286Clostridium phytofermentans ISDg, complete genometRNA-Leu8e-0649.3