Query: NC_008268:3162824 Rhodococcus sp. RHA1, complete genome
Start: 3162824, End: 3187271, Length: 24448
Host Lineage: Rhodococcus jostii; Rhodococcus; Nocardiaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: This strain was isolated from soil contaminated with gamma-hexachlorocyclohexane (lindane: a toxic insecticide) in Japan. Polychlorinated biphenyl degrading bacterium. Rhodococcus jostii is capable of degrading a wide variety of polychlorinated biphenyls (PCBs), which are toxic compounds produced by industry, and is studied extensively for this reason. This microbe is being examined thoroughly under different environmental conditions in order to better understand metabolic pathways and gene functions.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_008268:7180663 | 7180663 | 7221881 | 41219 | Rhodococcus sp. RHA1, complete genome | 2e-90 | 341 | BLASTN svg | BLASTP svg |
| NC_012522:98567 | 98567 | 122099 | 23533 | Rhodococcus opacus B4, complete genome | 2e-59 | 238 | BLASTN svg | BLASTP svg |
| NC_013757:3897413 | 3897413 | 3931815 | 34403 | Geodermatophilus obscurus DSM 43160, complete genome | 9e-28 | 133 | BLASTN svg | BLASTP svg |
| NC_007511:3080849 | 3080849 | 3099687 | 18839 | Burkholderia sp. 383 chromosome 2, complete sequence | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
| NC_008313:2685531* | 2685531 | 2708466 | 22936 | Ralstonia eutropha H16 chromosome 1, complete sequence | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
| NC_003888:2814360* | 2814360 | 2858685 | 44326 | Streptomyces coelicolor A3(2), complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_008726:4725389 | 4725389 | 4750389 | 25001 | Mycobacterium vanbaalenii PYR-1, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_013510:888542* | 888542 | 916099 | 27558 | Thermomonospora curvata DSM 43183, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_008596:4104476* | 4104476 | 4139831 | 35356 | Mycobacterium smegmatis str. MC2 155, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_008391:2253188 | 2253188 | 2278099 | 24912 | Burkholderia cepacia AMMD chromosome 2, complete sequence | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_021177:2451000* | 2451000 | 2473279 | 22280 | Streptomyces fulvissimus DSM 40593, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_015952:171707 | 171707 | 197999 | 26293 | Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, complete | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_010552:293703 | 293703 | 322599 | 28897 | Burkholderia ambifaria MC40-6 chromosome 2, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |