Pre_GI: BLASTP Hits

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Query: NC_008262:2498000:2517002 Clostridium perfringens SM101, complete genome

Start: 2517002, End: 2517580, Length: 579

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010723:371741:371741371741372322582Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein3e-38157
NC_020291:491000:499809499809500390582Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehypothetical protein1e-36152
NC_009617:385000:385287385287385868582Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein2e-35148
NC_010674:370629:376394376394376975582Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein2e-32138
NC_009922:1917271:193514119351411935743603Alkaliphilus oremlandii OhILAs, complete genomeconserved hypothetical protein3e-21101
NC_014828:1795781:179689217968921797527636Ethanoligenens harbinense YUAN-3 chromosome, complete genomehypothetical protein2e-0859.3
NC_020291:5778999:579325957932595793864606Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomezinc dependent phospholipase C4e-0857.8
NC_009617:588897:603663603663604262600Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehypothetical protein1e-0756.2