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Query: NC_008043:167108:176932 Silicibacter sp. TM1040 mega plasmid, complete sequence

Start: 176932, End: 177007, Length: 76

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008043:615049:62398162398162405676Silicibacter sp. TM1040 mega plasmid, complete sequencetRNA-Ala9e-0648.9
NC_003911:3453764:34657373465737346581276Silicibacter pomeroyi DSS-3, complete genometRNA-Ala9e-0648.9
NC_003911:253400:26373026373026380576Silicibacter pomeroyi DSS-3, complete genometRNA-Ala9e-0648.9
NC_008043:499399:50772950772950780476Silicibacter sp. TM1040 mega plasmid, complete sequencetRNA-Ala9e-0648.9
NC_003911:4001094:40140744014074401414976Silicibacter pomeroyi DSS-3, complete genometRNA-Ala9e-0648.9
NC_008044:136844:14669814669814677376Silicibacter sp. TM1040, complete genometRNA-Ala9e-0648.9