Pre_GI: BLASTP Hits

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Query: NC_007613:2699500:2702547 Shigella boydii Sb227, complete genome

Start: 2702547, End: 2703644, Length: 1098

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:3823347:3829123382912338302201098Escherichia coli O26:H11 str. 11368 chromosome, complete genomemurein transglycosylase A0752
NC_011745:3197584:3203360320336032044571098Escherichia coli ED1a chromosome, complete genomemurein transglycosylase A0750
NC_010498:3023442:3029219302921930302861068Escherichia coli SMS-3-5, complete genomemembrane-bound lytic murein transglycosylase A0730
NC_011283:942594:9638899638899649861098Klebsiella pneumoniae 342 chromosome, complete genomemurein transglycosylase A0700
NC_016632:398018:3980183980183991781161Serratia symbiotica str. 'Cinara cedri' chromosome, completemembrane-bound lytic murein transglycosylase A5e-124444
NC_017259:480656:4832184832184843001083Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,murein transglycosylase A8e-98357
NC_004061:498483:5055935055935066931101Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomemembrane-bound lytic murein transglycosylase1e-95350
NC_016513:54802:7442474424755421119Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completemurein transglycosyllase A2e-92339
NC_004459:1794540:1799230179923018003331104Vibrio vulnificus CMCP6 chromosome I, complete sequenceMembrane-bound lytic murein transglycosylase1e-82306
NC_007614:2764848:2794097279409727952901194Nitrosospira multiformis ATCC 25196 chromosome 1, completeMltA3e-35149
NC_014844:2158318:2159230215923021604981269Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeMltA domain-containing protein2e-28127
NC_007802:179780:1828511828511838671017Jannaschia sp. CCS1, complete genomeMltA2e-28126
NC_020209:4312892:4314921431492143161171197Pseudomonas poae RE*1-1-14, complete genometransglycosylase2e-28126
NC_008044:3024125:3024727302472730257851059Silicibacter sp. TM1040, complete genomeMltA6e-28125
NC_016616:1091606:1093534109353410947721239Dechlorosoma suillum PS chromosome, complete genomemembrane-bound lytic murein transglycosylase1e-27124
NC_009727:1177390:1189755118975511909571203Coxiella burnetii Dugway 7E9-12, complete genomemembrane-bound lytic murein transglycosylase family protein3e-27123
NC_009952:3596399:3627798362779836288261029Dinoroseobacter shibae DFL 12, complete genomemembrane-bound lytic murein transglycosylase A4e-27122
NC_009925:3344894:3359651335965133608291179Acaryochloris marina MBIC11017, complete genomemembrane-bound lytic transglycosylase A, putative7e-27121
NC_012559:2663747:2711678271167827128441167Laribacter hongkongensis HLHK9, complete genomeMembrane-bound lytic murein transglycosylase4e-26119
NC_003272:637970:6581236581236593161194Nostoc sp. PCC 7120, complete genomehypothetical protein2e-25117
NC_020304:256000:2765392765392777261188Desulfocapsa sulfexigens DSM 10523, complete genomemembrane-bound lytic murein transglycosylase7e-24111
NC_009850:2169459:2192344219234421934321089Arcobacter butzleri RM4018, complete genomepeptidoglycan N-acetylmuramoylhydrolase1e-23110
NC_019815:679592:6795926795926808181227Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneihypothetical protein3e-1169.7