Pre_GI: BLASTP Hits

Some Help

Query: NC_004741:2593012:2612123 Shigella flexneri 2a str. 2457T, complete genome

Start: 2612123, End: 2612344, Length: 222

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008344:2374761:237945123794512379672222Nitrosomonas eutropha C91, complete genomephage transcriptional regulator, AlpA4e-36149
NC_008344:669498:685588685588685809222Nitrosomonas eutropha C91, complete genomephage transcriptional regulator, AlpA4e-36149
NC_007508:2783443:280213928021392802384246Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeputative regulatory protein, AlpA family3e-27120
NC_016745:2028424:203948120394812039726246Oceanimonas sp. GK1 chromosome, complete genomehypothetical protein2e-26117
NC_013722:1816561:186478018647801865040261Xanthomonas albilineans, complete genomeputative regulatory protein, alpa family2e-26117
NC_009800:2651730:266438326643832664613231Escherichia coli HS, complete genometranscriptional regulator, AlpA family7e-23105
NC_011283:1307173:131055313105531310783231Klebsiella pneumoniae 342 chromosome, complete genometranscriptional regulator AlpA family2e-1787.8
NC_008254:534590:552348552348552623276Mesorhizobium sp. BNC1, complete genomephage transcriptional regulator, AlpA1e-1271.6
NC_012912:1295653:130391113039111304300390Dickeya zeae Ech1591, complete genomephage transcriptional regulator, AlpA2e-1271.2
NC_015381:2859000:291193329119332912316384Burkholderia gladioli BSR3 chromosome 1, complete sequencephage transcriptional regulator, AlpA4e-1270.1
NC_015730:1799500:182075618207561821064309Roseobacter litoralis Och 149 chromosome, complete genomeputative prophage regulatory protein5e-1269.7
NC_011992:1318691:132734713273471327730384Acidovorax ebreus TPSY, complete genomephage transcriptional regulator, AlpA9e-1268.9
NC_012779:3016327:303186030318603032114255Edwardsiella ictaluri 93-146, complete genomephage transcriptional regulator, AlpA1e-1168.6
NC_015138:2069739:208640220864022086686285Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeprophage CP4-57 regulatory1e-1168.6
NC_009832:4269804:428445142844514284693243Serratia proteamaculans 568, complete genomephage transcriptional regulator, AlpA4e-1063.5
NC_008322:2077628:209572820957282095949222Shewanella sp. MR-7, complete genomephage transcriptional regulator, AlpA4e-0650.1
NC_011750:527470:542063542063542446384Escherichia coli IAI39 chromosome, complete genomehypothetical protein8e-0649.3