Pre_GI: BLASTP Hits

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Query: NC_004631:1271500:1292016 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1292016, End: 1293458, Length: 1443

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:1359769:1381739138173913831811443Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein0978
NC_016860:1399290:1421260142126014227021443Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein0978
NC_016856:1411579:1433549143354914349911443Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Shypothetical protein0978
NC_003197:1401603:1423573142357314250151443Salmonella typhimurium LT2, complete genomehypothetical protein0978
NC_017046:1358531:1380501138050113819431443Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein0976
NC_016857:1358456:1380426138042613818681443Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein0976
NC_016810:1358456:1380426138042613818681443Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein0976
NC_020063:2011019:2033675203367520351171443Enterobacteriaceae bacterium strain FGI 57, complete genomehypothetical protein0784
NC_014500:2934232:2952014295201429534651452Dickeya dadantii 3937 chromosome, complete genomehypothetical protein0644
NC_017047:3085000:3088719308871930901731455Rahnella aquatilis HX2 chromosome, complete genomehypothetical protein2e-179629
NC_008752:3217695:3237643323764332391391497Acidovorax avenae subsp. citrulli AAC00-1, complete genomeprotein of unknown function UPF00611e-121437
NC_014722:1497244:1512514151251415140641551Burkholderia rhizoxinica HKI 454, complete genomehypothetical protein3e-121436
NC_008577:4611431:4611431461143146128851455Shewanella sp. ANA-3 chromosome 1, complete sequenceprotein of unknown function UPF00611e-117423
NC_015556:515641:5280825280825295451464Pseudomonas fulva 12-X chromosome, complete genomeUPF0061 protein ydiU3e-117422
NC_009092:261778:2809662809662824201455Shewanella loihica PV-4, complete genomeprotein of unknown function UPF00614e-113408
NC_014762:890914:9068859068859083211437Sulfuricurvum kujiense DSM 16994 chromosome, complete genomehypothetical protein5e-101368
NC_011894:4934304:4934304493430449358121509Methylobacterium nodulans ORS 2060, complete genomeprotein of unknown function UPF00614e-96352
NC_020453:4696000:4708366470836647098411476Agromonas oligotrophica S58 DNA, complete genomehypothetical protein3e-95349
NC_009663:1656804:1676258167625816776941437Sulfurovum sp. NBC37-1, complete genomehypothetical protein2e-93343
NC_016935:4813916:4830326483032648318011476Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein8e-91334
NC_016641:4853448:4874271487427148757461476Paenibacillus terrae HPL-003 chromosome, complete genomehypothetical protein2e-90333
NC_009328:448224:4957294957294971861458Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein6e-90331
NC_020156:2750000:2750512275051227522091698Nonlabens dokdonensis DSW-6, complete genomeUPF0061 protein1e-85317
NC_007498:357484:3745203745203759981479Pelobacter carbinolicus DSM 2380, complete genomehypothetical protein4e-85315
NC_009922:2556033:2559494255949425609661473Alkaliphilus oremlandii OhILAs, complete genomeprotein of unknown function UPF00612e-84313
NC_005085:1870890:1874026187402618754621437Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein8e-83308
NC_015576:612164:6121646121646135911428Mycobacterium sp. JDM601 chromosome, complete genomehypothetical protein2e-81303
NC_020388:1479568:1505228150522815066221395Natronomonas moolapensis 8.8.11 complete genomeUPF0061 family protein4e-75282
NC_012030:345837:3932893932893946831395Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completeprotein of unknown function UPF00614e-73275
NC_005125:637333:6387806387806403931614Gloeobacter violaceus PCC 7421, complete genomehypothetical protein2e-61237
NC_005071:2223795:2228826222882622303071482Prochlorococcus marinus str. MIT 9313, complete genomehypothetical protein5e-47189
NC_014166:2217790:2218936221893622206241689Arcobacter nitrofigilis DSM 7299 chromosome, complete genomehypothetical protein5e-41169
NC_007513:1388641:1414174141417414158741701Synechococcus sp. CC9902, complete genomeconserved hypotheical protein7e-41168