Pre_GI: BLASTP Hits

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Query: NC_004603:370320:382876 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 382876, End: 383667, Length: 792

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015633:2801321:281854528185452819321777Vibrio anguillarum 775 chromosome chromosome I, complete sequencehypothetical protein4e-126450
NC_013422:991500:101660110166011017401801Halothiobacillus neapolitanus c2, complete genomemetallophosphoesterase7e-1271.2
NC_010814:1441327:146667214666721467463792Geobacter lovleyi SZ, complete genomemetallophosphoesterase7e-1064.7
NC_012587:2298324:231220923122092312973765Rhizobium sp. NGR234, complete genomeputative phosphoesterase2e-0963.2
NC_014541:4167916:417915141791514179948798Ferrimonas balearica DSM 9799 chromosome, complete genomemetallophosphoesterase1e-0860.5
NC_008576:2458573:247372424737242474482759Magnetococcus sp. MC-1, complete genomemetallophosphoesterase1e-0860.5
NC_008700:367949:374607374607375368762Shewanella amazonensis SB2B, complete genomephosphoesterase, related to the Icc protein1e-0860.5
NC_018000:4958637:499384249938424994609768Sinorhizobium fredii USDA 257 chromosome, complete genomephosphoesterase2e-0859.7
NC_008380:2287327:230202823020282302795768Rhizobium leguminosarum bv. viciae 3841, complete genomeputative phosphatase2e-0859.7
NC_013222:229190:236228236228236992765Robiginitalea biformata HTCC2501, complete genomehypothetical protein2e-0756.2
NC_009468:38112:577595775958571813Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequencemetallophosphoesterase5e-0755.1