Pre_GI: BLASTP Hits

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Query: NC_004603:230000:245556 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 245556, End: 246218, Length: 663

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012791:2052923:207046920704692071134666Variovorax paradoxus S110 chromosome 1, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 11e-42172
NC_014151:813755:834535834535835245711Cellulomonas flavigena DSM 20109 chromosome, complete genomeHaloacid dehalogenase domain protein hydrolase1e-23109
NC_014915:3259440:326780632678063268483678Geobacillus sp. Y412MC52 chromosome, complete genomeHaloacid dehalogenase domain protein hydrolase2e-1789.4
NC_013411:3251500:326183732618373262514678Geobacillus sp. Y412MC61, complete genomeHaloacid dehalogenase domain protein hydrolase2e-1789.4
NC_012793:3275751:328130832813083282021714Geobacillus sp. WCH70, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 17e-1787.4
NC_020210:3169258:318092131809213181625705Geobacillus sp. GHH01, complete genomeHAD-family dehydrogenase8e-1787
NC_007644:779376:790564790564791235672Moorella thermoacetica ATCC 39073, complete genomeHaloacid dehalogenase-like hydrolase3e-1478.6
NC_020291:4944835:495093449509344951608675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomehaloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E3e-1375.1
NC_015573:1729057:173875717387571739431675Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeHaloacid dehalogenase domain-containing protein hydrolase9e-1373.6
NC_014650:376070:391312391312391989678Geobacillus sp. Y4.1MC1 chromosome, complete genomehaloacid dehalogenase3e-1271.6
NC_010424:1857062:186450718645071865190684Candidatus Desulforudis audaxviator MP104C, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 13e-1168.6
NC_014220:170021:188850188850189542693Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 16e-1167.8
NC_013202:1367447:138920813892081389894687Halomicrobium mukohataei DSM 12286, complete genomeHAD-superfamily hydrolase, subfamily IA, variant 16e-1167.4
NC_016112:806256:820852820852821508657Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein1e-1066.2
NC_010723:801215:820206820206820889684Clostridium botulinum E3 str. Alaska E43, complete genomeputative hydrolase2e-1065.9
NC_012881:4055962:406479040647904065476687Desulfovibrio salexigens DSM 2638, complete genomeHAD family hydrolase3e-1065.5
NC_010674:828191:842990842990843655666Clostridium botulinum B str. Eklund 17B, complete genomeputative hydrolase9e-1063.5