Pre_GI: BLASTP Hits

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Query: NC_004578:4465247:4480759 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4480759, End: 4481829, Length: 1071

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004129:5481629:5497835549783554988961062Pseudomonas fluorescens Pf-5, complete genomebiopolymer transport protein TolA1e-55217
NC_018080:4465618:4483553448355344845961044Pseudomonas aeruginosa DK2 chromosome, complete genomeTolA protein7e-35148
NC_011770:4763506:4782339478233947833821044Pseudomonas aeruginosa LESB58, complete genomeTolA protein7e-35148
NC_008463:4566976:4595483459548345965261044Pseudomonas aeruginosa UCBPP-PA14, complete genomeTolA protein7e-35148
NC_002516:1031386:1055009105500910560521044Pseudomonas aeruginosa PAO1, complete genomeTolA protein2e-34146
NC_018012:1935500:1953121195312119543981278Thiocystis violascens DSM 198 chromosome, complete genomeTolA protein1e-0757.8