Pre_GI: BLASTP Hits

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Query: NC_004578:4061372:4064916 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 4064916, End: 4065584, Length: 669

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012560:3282704:328939832893983290111714Azotobacter vinelandii DJ, complete genomealginate lyase1e-23109
NC_021150:3282702:328939632893963290109714Azotobacter vinelandii CA6, complete genomealginate lyase1e-23109
NC_015167:3469968:3472577347257734736261050Cellulophaga lytica DSM 7489 chromosome, complete genomepoly(beta-D-mannuronate) lyase1e-1892.8
NC_012560:1322000:1341827134182713430801254Azotobacter vinelandii DJ, complete genomeAlginate lyase8e-1684
NC_021150:1322000:1341839134183913430921254Azotobacter vinelandii CA6, complete genomeAlginate lyase8e-1684
NC_010001:615427:6230466230466277164671Clostridium phytofermentans ISDg, complete genomeAlginate lyase 24e-1581.6
NC_002947:4293252:430083443008344301508675Pseudomonas putida KT2440, complete genomehypothetical protein6e-1477.4
NC_009512:2238437:225384522538452254519675Pseudomonas putida F1, complete genomeAlginate lyase 22e-1375.9
NC_014623:9363409:9363409936340993645751167Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeputative alginate lyase3e-1272