Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3940021 Shigella flexneri 2a str. 301, complete genome

Start: 3940021, End: 3941889, Length: 1869

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010694:1:6666666685341869Erwinia tasmaniensis, complete genomeLow affinity potassium transport system protein kup (Kup system potassium uptake protein)0996
NC_012214:1:6644664485121869Erwinia pyrifoliae Ep1/96, complete genomeLow affinity potassium transport system protein kup (Kup system potassium uptake protein)0979
NC_008570:2768795:2781291278129127831591869Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomepotassium uptake protein0927
NC_015424:2357600:2366413236641323682811869Aeromonas veronii B565 chromosome, complete genomeputative potassium transport system protein kup 20919
NC_009348:1893292:1899189189918919010151827Aeromonas salmonicida subsp. salmonicida A449, complete genomepotassium transport protein Kup0884
NC_004578:4499143:4503214450321445051091896Pseudomonas syringae pv. tomato str. DC3000, complete genomepotassium uptake protein1e-158560
NC_015379:2751342:2759377275937727612181842Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,low affinity potassium transporter, membrane protein8e-158557
NC_021150:2451500:2451536245153624534341899Azotobacter vinelandii CA6, complete genomepotassium uptake protein8e-152537
NC_012560:2451500:2451524245152424534221899Azotobacter vinelandii DJ, complete genomepotassium uptake protein8e-152537
NC_010577:1087092:1108018110801811099221905Xylella fastidiosa M23, complete genomeK potassium transporter5e-150531
NC_004556:1076063:1098131109813111000351905Xylella fastidiosa Temecula1, complete genomepotassium uptake protein5e-150531
NC_010513:1128000:1147506114750611494101905Xylella fastidiosa M12 chromosome, complete genomepotassium uptake protein2e-146520
NC_016893:694587:7134507134507153151866Wigglesworthia glossinidia endosymbiont of Glossina morsitanspotassium transporter8e-145514
NC_010524:3914880:3929012392901239308981887Leptothrix cholodnii SP-6, complete genomeK potassium transporter2e-144513
NC_014013:301184:3144693144693163401872Sphingobium japonicum UT26S chromosome 2, complete genomeKUP system potassium uptake protein4e-141502
NC_011761:1499500:1516487151648715184211935Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completepotassium uptake protein2e-138493
NC_012791:2622923:2641152264115226429961845Variovorax paradoxus S110 chromosome 1, complete genomeK potassium transporter5e-138491
NC_014761:2248000:2264483226448322663781896Oceanithermus profundus DSM 14977 chromosome, complete genomepotassium transporter2e-136486
NC_010676:3009980:3037238303723830391631926Burkholderia phytofirmans PsJN chromosome 2, complete sequenceK potassium transporter2e-135483
NC_008343:2589680:2591138259113825931141977Granulibacter bethesdensis CGDNIH1, complete genomekup system potassium uptake protein8e-135481
NC_009485:3579323:3601534360153436033691836Bradyrhizobium sp. BTAi1 chromosome, complete genomeKup family low affinity potassium transporter1e-134480
NC_007762:88979:1129421129421148401899Rhizobium etli CFN 42 plasmid p42a, complete sequencepotassium transporter protein4e-130465
NC_010511:1691753:1712457171245717143701914Methylobacterium sp. 4-46 chromosome, complete genomeK potassium transporter4e-130465
NC_012988:1540587:1545446154544615473561911Methylobacterium extorquens DM4, complete genomepotassium uptake protein Kup6e-129461
NC_010125:1538335:1561867156186715637891923Gluconacetobacter diazotrophicus PAl 5, complete genomeputative potassium transport system protein kup8e-129461
NC_011757:1246000:1250690125069012526001911Methylobacterium chloromethanicum CM4, complete genomeK potassium transporter8e-129461
NC_007794:1553000:1555630155563015575341905Novosphingobium aromaticivorans DSM 12444, complete genomeK+ potassium transporter5e-126452
NC_014500:2402881:2426363242636324283361974Dickeya dadantii 3937 chromosome, complete genomeKup system potassium uptake protein2e-125450
NC_004344:672550:6919576919576938341878Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein2e-124446
NC_012779:2856051:2878743287874328806231881Edwardsiella ictaluri 93-146, complete genomehypothetical protein5e-122438
NC_012985:779279:7927817927817946671887Candidatus Liberibacter asiaticus str. psy62, complete genomeputative potassium uptake transport system protein1e-120434
NC_013592:2338403:2343530234353023453981869Dickeya dadantii Ech586, complete genomeK potassium transporter2e-119430
NC_019907:1060005:1062954106295410648551902Liberibacter crescens BT-1 chromosome, complete genomeKup system potassium uptake protein2e-118426
NC_010172:1222150:1223772122377212254811710Methylobacterium extorquens PA1, complete genomeK potassium transporter1e-115417
NC_009921:5531972:5545402554540255473661965Frankia sp. EAN1pec, complete genomeK potassium transporter2e-114413
NC_012559:1635922:1642460164246016443311872Laribacter hongkongensis HLHK9, complete genomeKup2e-114413
NC_014774:605085:6207276207276226071881Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeputative potassium uptake transport system protein3e-110399
NC_021066:1393750:1399138139913814005141377Raoultella ornithinolytica B6, complete genomepotassium transporter6e-74279
NC_013730:58840:7525275252772191968Spirosoma linguale DSM 74, complete genomeK potassium transporter8e-72271
NC_017219:2646157:2676041267604126785452505Bifidobacterium longum subsp. infantis ATCC 15697, complete genomepotassium transport protein4e-71269
NC_011593:2650156:2680040268004026822742235Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,K+ potassium transporter1e-70268
NC_013132:8732093:8749228874922887512131986Chitinophaga pinensis DSM 2588, complete genomeK potassium transporter3e-69263
NC_009617:2355662:2359063235906323610662004Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeK+ potassium transporter3e-63243
NC_011883:2680380:2680874268087426826881815Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,K potassium transporter2e-59231
NC_015602:1143038:1147040114704011490642025Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeputative potassium transport system protein kup 22e-58228