Pre_GI: BLASTP Hits

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Query: NC_004337:1065609:1082266 Shigella flexneri 2a str. 301, complete genome

Start: 1082266, End: 1082598, Length: 333

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
AC_000091:1083798:110520211052021105534333Escherichia coli W3110 DNA, complete genomepredicted curli production protein1e-48191
NC_000913:1087062:110418411041841104516333Escherichia coli K12, complete genomepredicted curli production protein1e-48191
NC_013716:1178383:120234012023401202672333Citrobacter rodentium ICC168, complete genomeputative curli production protein csgc precursor8e-39158
NC_011080:1209935:123393412339341234260327Salmonella enterica subsp. enterica serovar Newport str. SL254,curli production protein CsgC6e-36149
NC_003197:1207597:123214712321471232473327Salmonella typhimurium LT2, complete genomeputative curli production protein precursor6e-36149
NC_016863:1165232:118960011896001189926327Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative autoagglutination protein6e-36149
NC_017046:1164176:118836011883601188686327Salmonella enterica subsp. enterica serovar Typhimurium str. 798curli prooduction protein6e-36149
NC_016860:1205282:122973412297341230159426Salmonella enterica subsp. enterica serovar Typhimurium strputative autoagglutination protein4e-36149
NC_006905:1186895:121224412122441212558315Salmonella enterica subsp. enterica serovar Choleraesuis strputative curli production protein8e-36148
NC_003198:1117687:114242311424231142749327Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein1e-35148
NC_014121:2629075:263984226398422640174333Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completecurli production protein2e-30131
NC_016514:1701273:171006117100611710393333Enterobacter cloacae EcWSU1 chromosome, complete genomeCurli assembly protein CsgC4e-30129
NC_015968:1709680:172024317202431720575333Enterobacter asburiae LF7a chromosome, complete genomeCurli production protein CsgC6e-26115