Pre_GI: BLASTP Hits

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Query: NC_004129:5204500:5207174 Pseudomonas fluorescens Pf-5, complete genome

Start: 5207174, End: 5208415, Length: 1242

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:2235607:2237998223799822392001203Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-65249
NC_011149:2179592:2183395218339521845971203Salmonella enterica subsp. enterica serovar Agona str. SL483,putative cytoplasmic protein3e-65249
NC_012125:1632150:1654012165401216552141203Salmonella enterica subsp. enterica serovar Paratyphi C straincytoplasmic protein4e-65248
NC_008253:2198583:2206255220625522074691215Escherichia coli 536, complete genomeputative cytoplasmic protein5e-60232
NC_004431:2444972:2455722245572224569361215Escherichia coli CFT073, complete genomehypothetical protein1e-59231
NC_004631:799810:819259819259820143885Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein4e-47189
NC_003198:2179688:218379321837932184677885Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein4e-47189
NC_016832:799764:819213819213820097885Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein4e-47189
NC_011147:792489:812007812007812891885Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein4e-45182
NC_006511:792543:812061812061812945885Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein4e-45182
NC_016832:799764:820097820097820399303Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein2e-0963.9
NC_003198:2179688:218349121834912183793303Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-0963.9
NC_004631:799810:820143820143820445303Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein2e-0963.9