Pre_GI: BLASTP Hits

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Query: NC_003197:3902500:3915683 Salmonella typhimurium LT2, complete genome

Start: 3915683, End: 3915916, Length: 234

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:3864000:387698238769823877215234Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein3e-39160
NC_016857:3924000:393699839369983937231234Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein3e-39160
NC_016856:3916500:392937539293753929608234Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein3e-39160
NC_016810:3923988:393699739369973937230234Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein3e-39160
NC_006905:3845000:385798438579843858217234Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein1e-37155
NC_011294:3782655:379678737967873797020234Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein3e-36150
NC_011274:3894387:390181639018163902049234Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-35146
NC_011083:3915500:392869339286933928902210Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein2e-34144
NC_016860:3925500:393857939385793938788210Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein2e-34144
NC_012125:3840000:385283838528383853047210Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein2e-33141
NC_010102:3851500:386463038646303864839210Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-32137
NC_016831:3875134:388258738825873882796210Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein2e-31134
NC_011205:3942500:395538439553843955593210Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein2e-31134
NC_011147:3686500:369924836992483700228981Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein6e-25112
NC_006511:3690828:370357137035713704551981Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein6e-25112
NC_011080:3875320:388806438880643889044981Salmonella enterica subsp. enterica serovar Newport str. SL254,WaaS6e-25112
NC_017046:3923000:393582439358243935925102Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein4e-1270.1