Pre_GI: BLASTP Hits

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Query: NC_003063:1019674:1039411 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1039411, End: 1041102, Length: 1692

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020541:2487427:2502168250216825038381671Rhodanobacter sp. 2APBS1, complete genomeurocanate hydratase0885
NC_006677:1255079:1272765127276512744501686Gluconobacter oxydans 621H, complete genomeurocanate hydratase0883
NC_015224:4426167:4426167442616744278581692Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,urocanate hydratase0881
NC_010465:62348:8488384883865741692Yersinia pseudotuberculosis YPIII, complete genomeurocanate hydratase0870
NC_014924:2108116:2132800213280021344731674Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeurocanate hydratase0867
NC_014532:1713987:1715696171569617173751680Halomonas elongata DSM 2581, complete genomeurocanate hydratase0865
NC_004347:103967:1048011048011064711671Shewanella oneidensis MR-1, complete genomeurocanate hydratase0851
NC_010694:2492378:2511665251166525133501686Erwinia tasmaniensis, complete genomeUrocanate hydratase0837
NC_016779:3418538:3424840342484034264981659Bacillus cereus F837/76 chromosome, complete genomeurocanate hydratase0727
NC_012581:803456:8241948241948258521659Bacillus anthracis str. CDC 684 chromosome, complete genomeurocanate hydratase0726
NC_016771:3386660:3386660338666033883181659Bacillus cereus NC7401, complete genomeurocanate hydratase0726
NC_014551:3797047:3815671381567138173351665Bacillus amyloliquefaciens DSM 7, complete genomeurocanase0724
NC_017191:3766960:3785564378556437872281665Bacillus amyloliquefaciens XH7 chromosome, complete genomeurocanate hydratase0723
NC_017188:3764061:3783872378387237855361665Bacillus amyloliquefaciens TA208 chromosome, complete genomeurocanate hydratase0723
NC_020272:162779:1627791627791644431665Bacillus amyloliquefaciens IT-45, complete genomeurocanate hydratase0723
NC_017190:3812065:3830693383069338323571665Bacillus amyloliquefaciens LL3 chromosome, complete genomeurocanase0722
NC_017347:2437902:2450527245052724521881662Staphylococcus aureus subsp. aureus T0131 chromosome, completeurocanate hydratase0715
NC_011999:1567818:1576934157693415785981665Macrococcus caseolyticus JCSC5402, complete genomeurocanate hydratase0712
NC_019942:987134:9917839917839934321650Aciduliprofundum sp. MAR08-339, complete genomeurocanate hydratase0693
NC_017095:1927118:1934539193453919361941656Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeurocanate hydratase0680
NC_010718:3039434:3048300304830030499491650Natranaerobius thermophilus JW/NM-WN-LF, complete genomeurocanate hydratase0675
NC_010617:2626000:2626107262610726278251719Kocuria rhizophila DC2201, complete genomeurocanate hydratase0665
NC_016887:221788:2335492335492352281680Nocardia cyriacigeorgica GUH-2, complete genomeUrocanate hydratase (Urocanase) (Imidazolonepropionate hydrolase)0664
NC_013939:913890:9351959351959368741680Deferribacter desulfuricans SSM1, complete genomeurocanate hydratase0662
NC_013744:349297:3716933716933734891797Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completeurocanate hydratase9e-174610
NC_014729:1367862:1367862136786213696251764Halogeometricum borinquense DSM 11551 chromosome, complete genomeurocanate hydratase1e-169597
NC_016645:985802:9953059953059971581854Pyrobaculum sp. 1860 chromosome, complete genomeurocanate hydratase2e-144512
NC_016885:603269:6117416117416135911851Pyrobaculum oguniense TE7 chromosome, complete genomeurocanate hydratase3e-143509
NC_009376:1335074:1342669134266913445191851Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeurocanate hydratase5e-143508
NC_006350:1938631:1958040195804019596801641Burkholderia pseudomallei K96243 chromosome 1, complete sequenceurocanate hydratase2e-141503
NC_007434:2424884:2424884242488424265241641Burkholderia pseudomallei 1710b chromosome I, complete sequenceurocanate hydratase2e-141503
NC_015594:332432:345943345943346608666Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete2e-102373
NC_014328:2326930:2340937234093723429642028Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeurocanate hydratase2e-83310
NC_006138:2683545:2683545268354526856382094Desulfotalea psychrophila LSv54, complete genomeurocanate hydratase2e-81303
NC_015318:1583839:1592581159258115945812001Hippea maritima DSM 10411 chromosome, complete genomeurocanate hydratase7e-81301
NC_014614:6115:3703537035390652031Clostridium sticklandii, complete genomeurocanase1e-79297
NC_009615:4425500:4452475445247544544782004Parabacteroides distasonis ATCC 8503 chromosome, complete genomeurocanate hydratase2e-78293
NC_016940:1698000:1699074169907417010922019Saprospira grandis str. Lewin chromosome, complete genomeurocanate hydratase5e-76285
NC_007296:1762000:1766629176662917686592031Streptococcus pyogenes MGAS6180, complete genomeurocanate hydratase2e-75283
NC_018515:4196409:4210627421062742126482022Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeurocanate hydratase3e-75283
NC_008700:1994829:1997435199743519994472013Shewanella amazonensis SB2B, complete genomeUrocanate hydratase3e-73276
NC_012108:4937000:4953541495354149555742034Desulfobacterium autotrophicum HRM2, complete genomeHutU21e-69264