Pre_GI: BLASTN Hits

Some Help

Query: NC_017066:262839 Rickettsia typhi str. TH1527 chromosome, complete genome

Start: 262839, End: 282047, Length: 19209

Host Lineage: Rickettsia typhi; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, is composed of obligate intracellular pathogens. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. Transovarial transmission (from mother to offspring) occurs in the invertebrate host. This organism causes murine typhus and is an obligate intracellular pathogen that infects both the flea vector and hosts such as human, rat, and mouse. R. prowazekii, and genomic comparisons demonstrate colinearity and similarity to the genome of that organism except for two independent inversions near the origin and terminus. In the flea vector, the bacterium penetrates the gut epithelial barrier and is found in the feces which become infective.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006142:262825*26282528203319209Rickettsia typhi str. Wilmington, complete genome012000BLASTN svgBLASTP svg
NC_012730:293634*29363431769424061Rickettsia peacockii str. Rustic, complete genome01961BLASTN svgBLASTP svg
NC_010263:278463*27846329631117849Rickettsia rickettsii str. Iowa, complete genome01961BLASTN svgBLASTP svg
NC_009882:278384*27838429623817855Rickettsia rickettsii str. 'Sheila Smith', complete genome01961BLASTN svgBLASTP svg
NC_015866:274550*27455029923324684Rickettsia heilongjiangensis 054 chromosome, complete genome01945BLASTN svgBLASTP svg
NC_012633:276500*27650029409917600Rickettsia africae ESF-5, complete genome01913BLASTN svgBLASTP svg
NC_009879:260000*26000028209922100Rickettsia canadensis str. McKiel, complete genome01885BLASTN svgBLASTP svg
NC_009881:283500*28350030114817649Rickettsia akari str. Hartford, complete genome01786BLASTN svgBLASTP svg
NC_007109:1025500*1025500104404618547Rickettsia felis URRWXCal2, complete genome01356BLASTN svgBLASTP svg
NC_009883:1262000*1262000128409922100Rickettsia bellii OSU 85-389, complete genome2e-74287BLASTN svgBLASTP svg
NC_007940:266000*26600028816822169Rickettsia bellii RML369-C, complete genome2e-74287BLASTN svgBLASTP svg
NC_018697:361339*36133938386822530Cycloclasticus sp. P1 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_007109:89400089400091609922100Rickettsia felis URRWXCal2, complete genome6e-0763.9BLASTN svgBLASTP svg