Query: NC_014323:3195178 Herbaspirillum seropedicae SmR1 chromosome, complete genome
Start: 3195178, End: 3219599, Length: 24422
Host Lineage: Herbaspirillum seropedicae; Herbaspirillum; Oxalobacteraceae; Burkholderiales; Proteobacteria; Bacteria
General Information: Root-associated nitrogen-fixing bacterium. Herbaspirillum seropedicae is an endophitic nitrogen-fixing beta-Proteobacteria found associated with important crops such as sugarcane, wheat, maize, rice and sorghum. It is non-phytopathogenic and produces interesting biotechnological products such as polybetaalkanoates and cyanophycin. Herbaspirillum seropedicae was isolated from the roots of rice plants, and is member of a group of free-living soil bacteria known to promote plant growth. The yields of rice and sorghum were significantly increased when grown in soil inoculated with Herbaspirillum seropedicae.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_015259:485015* | 485015 | 564183 | 79169 | Polymorphum gilvum SL003B-26A1 chromosome, complete genome | 7e-75 | 289 | BLASTN svg | BLASTP svg |
| NC_010512:951527 | 951527 | 976357 | 24831 | Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence | 5e-42 | 180 | BLASTN svg | BLASTP svg |
| NC_014323:3292082* | 3292082 | 3319435 | 27354 | Herbaspirillum seropedicae SmR1 chromosome, complete genome | 1e-33 | 153 | BLASTN svg | BLASTP svg |
| NC_013446:4182878 | 4182878 | 4201219 | 18342 | Comamonas testosteroni CNB-2, complete genome | 1e-33 | 153 | BLASTN svg | BLASTP svg |
| NC_015563:5162177* | 5162177 | 5186117 | 23941 | Delftia sp. Cs1-4 chromosome, complete genome | 4e-30 | 141 | BLASTN svg | BLASTP svg |
| NC_010002:2293670* | 2293670 | 2317677 | 24008 | Delftia acidovorans SPH-1, complete genome | 4e-30 | 141 | BLASTN svg | BLASTP svg |
| NC_008752:3902637* | 3902637 | 3937513 | 34877 | Acidovorax avenae subsp. citrulli AAC00-1, complete genome | 9e-22 | 113 | BLASTN svg | BLASTP svg |
| NC_015731:2400526* | 2400526 | 2425494 | 24969 | Nitrosomonas sp. Is79A3 chromosome, complete genome | 5e-14 | 87.7 | BLASTN svg | BLASTP svg |
| NC_009439:2337024* | 2337024 | 2362354 | 25331 | Pseudomonas mendocina ymp, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
| NC_010067:2488141 | 2488141 | 2519373 | 31233 | Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
| NC_014910:2585747* | 2585747 | 2608526 | 22780 | Alicycliphilus denitrificans BC chromosome, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
| NC_008313:2629281* | 2629281 | 2647099 | 17819 | Ralstonia eutropha H16 chromosome 1, complete sequence | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_007953:572926 | 572926 | 603042 | 30117 | Burkholderia xenovorans LB400 chromosome 3, complete sequence | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_007953:1088933 | 1088933 | 1108769 | 19837 | Burkholderia xenovorans LB400 chromosome 3, complete sequence | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_015677:1460000 | 1460000 | 1482352 | 22353 | Ramlibacter tataouinensis TTB310 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_010623:1961685 | 1961685 | 2041599 | 79915 | Burkholderia phymatum STM815 chromosome 2, complete sequence | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_015410:2838132* | 2838132 | 2864051 | 25920 | Pseudomonas mendocina NK-01 chromosome, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_013421:4714478* | 4714478 | 4780026 | 65549 | Pectobacterium wasabiae WPP163, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |