Query: NC_012917:4328463 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome
Start: 4328463, End: 4352099, Length: 23637
Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_012912:325913 | 325913 | 348331 | 22419 | Dickeya zeae Ech1591, complete genome | 7e-118 | 432 | BLASTN svg | BLASTP svg |
NC_013592:4295449 | 4295449 | 4320442 | 24994 | Dickeya dadantii Ech586, complete genome | 3e-108 | 400 | BLASTN svg | BLASTP svg |
NC_015968:3053565 | 3053565 | 3076214 | 22650 | Enterobacter asburiae LF7a chromosome, complete genome | 3e-71 | 278 | BLASTN svg | BLASTP svg |
NC_008570:4009762* | 4009762 | 4032153 | 22392 | Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome | 6e-29 | 137 | BLASTN svg | BLASTP svg |
NC_012917:4646491 | 4646491 | 4667665 | 21175 | Pectobacterium carotovorum subsp. carotovorum PC1, complete genome | 9e-25 | 123 | BLASTN svg | BLASTP svg |
NC_015424:748785* | 748785 | 773899 | 25115 | Aeromonas veronii B565 chromosome, complete genome | 3e-24 | 121 | BLASTN svg | BLASTP svg |
NC_004547:138500 | 138500 | 159068 | 20569 | Erwinia carotovora subsp. atroseptica SCRI1043, complete genome | 5e-23 | 117 | BLASTN svg | BLASTP svg |
NC_012880:135508 | 135508 | 160528 | 25021 | Dickeya dadantii Ech703, complete genome | 2e-22 | 115 | BLASTN svg | BLASTP svg |
NC_015556:4118304 | 4118304 | 4142712 | 24409 | Pseudomonas fulva 12-X chromosome, complete genome | 8e-22 | 113 | BLASTN svg | BLASTP svg |
NC_009348:3819271* | 3819271 | 3846156 | 26886 | Aeromonas salmonicida subsp. salmonicida A449, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_012913:2189862* | 2189862 | 2215359 | 25498 | Aggregatibacter aphrophilus NJ8700, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_003063:304962 | 304962 | 334283 | 29322 | Agrobacterium tumefaciens str. C58 chromosome linear, complete | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_013416:386301* | 386301 | 408381 | 22081 | Aggregatibacter actinomycetemcomitans D11S-1, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_003305:1743939 | 1743939 | 1772599 | 28661 | Agrobacterium tumefaciens str. C58 chromosome linear, complete | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
NC_009720:2143124* | 2143124 | 2167629 | 24506 | Xanthobacter autotrophicus Py2, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_006513:1695487 | 1695487 | 1720393 | 24907 | Azoarcus sp. EbN1, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_007643:955362 | 955362 | 974599 | 19238 | Rhodospirillum rubrum ATCC 11170, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_014217:4550544 | 4550544 | 4589157 | 38614 | Starkeya novella DSM 506 chromosome, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012559:1228280* | 1228280 | 1274613 | 46334 | Laribacter hongkongensis HLHK9, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_007952:3037590 | 3037590 | 3056176 | 18587 | Burkholderia xenovorans LB400 chromosome 2, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |