Query: NC_010741:12542 Treponema pallidum subsp. pallidum SS14, complete genome
Start: 12542, End: 32925, Length: 20384
Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria
General Information: Treponema pallidum subsp. pallidum SS14 was isolated in 1977 from a patient with secondary syphilis. This strain is less susceptible than the Nichols strain for a number of antibiotics. This organisms is divided into subspecies each of which causes a specific disease. This organism is the causative agent of endemic and venereal syphilis. This sexual transmitted disease was first discovered in Europe at the end of the fifteenth century, however, the causative agent was not identified until 1905. At one time syphilis was the third most commonly reported communicable disease in the USA. Syphilis is characterized by multiple clinical stages and long periods of latent, asymptomatic infection. Although effective therapies have been available since the introduction of penicillin, syphilis remains a global health problem.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_000919:12545* | 12545 | 32928 | 20384 | Treponema pallidum subsp. pallidum str. Nichols, complete genome | 0 | 39750 | BLASTN svg | BLASTP svg |
NC_015714:1* | 1 | 18364 | 18364 | Treponema paraluiscuniculi Cuniculi A chromosome, complete genome | 0 | 11120 | BLASTN svg | BLASTP svg |
NC_003869:45560* | 45560 | 67452 | 21893 | Thermoanaerobacter tengcongensis MB4, complete genome | 4e-17 | 97.6 | BLASTN svg | BLASTP svg |
NC_014538:33718* | 33718 | 55282 | 21565 | Thermoanaerobacter sp. X513 chromosome, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_014209:81643* | 81643 | 120099 | 38457 | Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome, | 7e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_013921:36000* | 36000 | 58205 | 22206 | Thermoanaerobacter italicus Ab9 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_020134:205000 | 205000 | 224586 | 19587 | Clostridium stercorarium subsp. stercorarium DSM 8532, complete | 2e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_011296:102650* | 102650 | 129142 | 26493 | Thermodesulfovibrio yellowstonii DSM 11347, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014933:2240000* | 2240000 | 2263868 | 23869 | Bacteroides helcogenes P 36-108 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_015555:49842* | 49842 | 90779 | 40938 | Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_019970:35985 | 35985 | 76487 | 40503 | Thermoanaerobacterium thermosaccharolyticum M0795, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_003143:1630000 | 1630000 | 1676099 | 46100 | Yersinia pestis CO92, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_006155:1756000 | 1756000 | 1794676 | 38677 | Yersinia pseudotuberculosis IP 32953, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008149:2802392 | 2802392 | 2853676 | 51285 | Yersinia pestis Nepal516, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008150:844727 | 844727 | 890099 | 45373 | Yersinia pestis Antiqua, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_010634:1755548 | 1755548 | 1795424 | 39877 | Yersinia pseudotuberculosis PB1/+, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_019897:3025871* | 3025871 | 3048706 | 22836 | Thermobacillus composti KWC4 chromosome, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_013730:3208571* | 3208571 | 3245921 | 37351 | Spirosoma linguale DSM 74, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008536:3988520* | 3988520 | 4010590 | 22071 | Solibacter usitatus Ellin6076, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_004113:1234048* | 1234048 | 1260286 | 26239 | Thermosynechococcus elongatus BP-1, complete genome | 2e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_018643:641360* | 641360 | 664313 | 22954 | Alpha proteobacterium HIMB5 chromosome, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_014363:8228* | 8228 | 36068 | 27841 | Olsenella uli DSM 7084 chromosome, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |
NC_013209:2032500* | 2032500 | 2055746 | 23247 | Acetobacter pasteurianus IFO 3283-01, complete genome | 9e-06 | 60 | BLASTN svg | BLASTP svg |