Pre_GI: BLASTN Hits

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Query: NC_010067:2881448 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

Start: 2881448, End: 2904114, Length: 22667

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011149:25760257604831422555Salmonella enterica subsp. enterica serovar Agona str. SL483,014770BLASTN svgBLASTP svg
NC_004631:25807258074831322507Salmonella enterica subsp. enterica serovar Typhi Ty2, complete014720BLASTN svgBLASTP svg
NC_003198:25807258074831322507Salmonella enterica subsp. enterica serovar Typhi str. CT18,014710BLASTN svgBLASTP svg
NC_003197:25803258034831722515Salmonella typhimurium LT2, complete genome014690BLASTN svgBLASTP svg
NC_006511:25796257964828322488Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC014640BLASTN svgBLASTP svg
NC_011080:25751257514830822558Salmonella enterica subsp. enterica serovar Newport str. SL254,014630BLASTN svgBLASTP svg
NC_010102:25893258934815522263Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,08358BLASTN svgBLASTP svg
NC_011750:12047*120474221230166Escherichia coli IAI39 chromosome, complete genome1e-107398BLASTN svgBLASTP svg
NC_015733:1680500*1680500170310522606Pseudomonas putida S16 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg